View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_high_1 (Length: 703)
Name: NF2705_high_1
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 632; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 10 - 686
Target Start/End: Complemental strand, 28858933 - 28858257
Alignment:
| Q |
10 |
aagaatatatcatacatatgtcagttacaattataatctgttatgttcattaatttagcagcaaccgtgtttaagaataaatcacagtatcacattacat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28858933 |
aagaatatatcatacatatgtcagttacaattataatctgttatgttcattaatttagcagcaaccgcgtttaagaataaatcacagtatcacattacat |
28858834 |
T |
|
| Q |
110 |
atatcaatgccgtgtatcaactgttaagtacttcatttataaatcttaacacgtctataatatttaagaaggcacatagagagcattagttatggaacaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28858833 |
atatcaatgccgtgtatcaactgttaagtacttcatttataaatcttaacacgtctataatatttaagaaggcacatagagagcattagttatggaacaa |
28858734 |
T |
|
| Q |
210 |
aatgctcaaatttggaatgagcattaatgtgtaaagcttggatttggcgccttggctcttctgcagcctgtgctctttttatttttctaaaccttccgtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28858733 |
aatgctcaaatttggaatgagcattaatgtgtaaggcttggatttggcgccttggctcttctgcagcctgtgctctttttatttttctaaaccttccgtt |
28858634 |
T |
|
| Q |
310 |
tcctaggagaaagggttgtgataatctgaattttgactgagaggtaagtaaagtttgatcaaggattgttccagtcaaagttgaattcaagtacttacgg |
409 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28858633 |
tcctaggagaaagggctgtgataatctgaattttgactgagaggtaagtaaagtttgatcaaggattgttccagtcaaagttgaattcaagtacttacgg |
28858534 |
T |
|
| Q |
410 |
ttgaatcaaccttatctgaagttcattaaccatttgatgtcttgatttacattaatgttgtttagtgtgtccaaaatgtggtttcttgttgtgtcaaatc |
509 |
Q |
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| T |
28858533 |
ttgaatcaaccttatctgaagttcattaaccatctgatgtcttgatttacattaatgttgtttagtgtgtccaaaatgtggtttcttgttgtgtcaaatc |
28858434 |
T |
|
| Q |
510 |
tactttgcataaaatggttccaatttccgnnnnnnncgagcaaagtgactaagttagttgttaggggtcaaaccatagacctcctgcaaaaactcttttt |
609 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28858433 |
tactttgcataaaatggttccaatttctgtttttttcgagcaaagtgactaagttagttgttagggatcaaaccatagacctcctgcaaaaactcttttt |
28858334 |
T |
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| Q |
610 |
gagtcccttagatcaccaatcgaactacttatttgggactgtttcttagtatttacccttgacttaaccttatcttt |
686 |
Q |
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| T |
28858333 |
gagtcccttagatcaccaatcgaactacttatttgggactgtttcttagtatttacccttgacttaaccttatcttt |
28858257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 166 - 477
Target Start/End: Complemental strand, 28874118 - 28873803
Alignment:
| Q |
166 |
ataatatttaagaaggcacatagagagcattagttatggaacaaaatgctcaaatttggaatgagcattaatgtgtaaagcttggatttggcgccttggc |
265 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| | | ||||||| ||| |||||||||| |
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| T |
28874118 |
ataatatttaagaaggcacatagagaacattagttatggaacaatatgctcaaatttgaaatgagcattaatgcgcagagcttgggtttagcgccttggc |
28874019 |
T |
|
| Q |
266 |
tcttctgcagcctgtgctctttttatttttctaaaccttccgtttcctaggagaaagggttgtgataatctgaattttgactgagaggtaagtaaagttt |
365 |
Q |
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||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| |
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| T |
28874018 |
tcttctgcaacctgtgttctttttatttttctaaaccttctatttcctaggagaaagggctatggtaatctgaattttgactgagaggtaagtagagttt |
28873919 |
T |
|
| Q |
366 |
gatcaaggattgttccagtcaaagttgaattcaagtacttacggttgaatcaaccttatctgaagttcattaaccatttgatgtctt----gatttacat |
461 |
Q |
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||||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || ||||||||| |
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| T |
28873918 |
gatcaaggactgttctagttaaagtcaaattcaagtacttacggttgaatcaaccttatttgaagttcattaaccacttgatgtgttgatcgatttacat |
28873819 |
T |
|
| Q |
462 |
taatgttgtttagtgt |
477 |
Q |
| |
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| ||||| |||||||| |
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| T |
28873818 |
tgatgttctttagtgt |
28873803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 28843412 - 28843262
Alignment:
| Q |
10 |
aagaatatatcatacatatgtcagttacaattataatctgttatgttcattaatttagcagcaaccgtgtttaagaataaatcacagtatcacattacat |
109 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||||||||| |||| |||| |||||||||| ||||| ||||| ||||||||||||| | ||| |
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| T |
28843412 |
aagaatatatcatatatatgtcagttataattataatctgttatattcagtaatcgggcagcaaccgcgtttaggaatagatcacagtatcacttcacac |
28843313 |
T |
|
| Q |
110 |
atatcaatgccgtgtatcaactgttaagtacttcatttataaatcttaaca |
160 |
Q |
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|||||||||| |||||||||||||||||||| || ||||||||||| |||| |
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| T |
28843312 |
atatcaatgctgtgtatcaactgttaagtacctcttttataaatctaaaca |
28843262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 28874241 - 28874169
Alignment:
| Q |
61 |
aatttagcagcaaccgtgtttaagaataaatcacagtatcacattacatatatcaatgccgtgtatcaactgt |
133 |
Q |
| |
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||||||||| |||||| ||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||| |
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| T |
28874241 |
aatttagcaacaaccgcgtttaagaaaaaaacacagtatcacattacatatattaatgttgtgtatcaactgt |
28874169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 455 - 529
Target Start/End: Complemental strand, 28843042 - 28842968
Alignment:
| Q |
455 |
tttacattaatgttgtttagtgtgtccaaaatgtggtttcttgttgtgtcaaatctactttgcataaaatggttc |
529 |
Q |
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|||||||||||||| ||| ||||||| | |||||||||||||||||| || || |||||| ||||||||||||| |
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| T |
28843042 |
tttacattaatgttctttggtgtgtcgataatgtggtttcttgttgtatcggatttactttacataaaatggttc |
28842968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 28843152 - 28843059
Alignment:
| Q |
291 |
tttttctaaaccttccgtttcctaggagaaagggttgtgataatctgaattttgactgagaggtaagtaaagtttgatcaaggattgttccagtca |
386 |
Q |
| |
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|||||||||||| |||||||||||||| |||||| | |||||| |||||| ||| |||| || |||||||||||| ||||||||||| ||||| |
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| T |
28843152 |
tttttctaaaccctccgtttcctaggaaaaagggataagataattcgaatttcgaccgaga--tatgtaaagtttgattaaggattgttcaagtca |
28843059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 28843238 - 28843171
Alignment:
| Q |
219 |
atttggaatgagcattaatgtgtaaagcttggatttggcgccttggctcttctgcagcctgtgctcttt |
287 |
Q |
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||||||||||||||||||||||||| |||||| ||||| || ||||| ||||||| ||| |||| ||| |
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| T |
28843238 |
atttggaatgagcattaatgtgtaaggcttgggattggcacc-tggctattctgcaacctttgcttttt |
28843171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 12880145 - 12880117
Alignment:
| Q |
121 |
gtgtatcaactgttaagtacttcatttat |
149 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
12880145 |
gtgtatcaactgttaagtacttcatttat |
12880117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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