View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2705_high_11 (Length: 452)
Name: NF2705_high_11
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 268 - 434
Target Start/End: Complemental strand, 31186475 - 31186309
Alignment:
| Q |
268 |
ccattgcctatcttatcacatggaaaaagaaatttgttctactatttttgatacaaatgaaaatgtgttttatcacagatgtgtcatgttctataatttt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31186475 |
ccattgcctatcttatcacatggaaaaagaaatttgttctactatttttgatacaaatgaaaatgtgttttatcacagatgtgtcatgttctataatatt |
31186376 |
T |
|
| Q |
368 |
ttaaattggctatattctggtgtctgcggcatgttgtatccgtgctttatatttgtgataaatgctt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31186375 |
ttaaattggctatattctggtgtctgcggcatgttgtatccgtgctttatatttgtgataaatgctt |
31186309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 31186737 - 31186544
Alignment:
| Q |
3 |
gagtgagatgaagtaatgataatcctcttcaaaaaagagtcttgattatagatttccaccatatttggtgggagttggaagggatattgtaaaccttcct |
102 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31186737 |
gagtgagaaggagtaatgataatcctcttcaaaaaagagtcttgattatagatttccaccatatttggtgggagttggaagggatattgtaaacctt-ct |
31186639 |
T |
|
| Q |
103 |
agttgggtaagaacgagggaaatcctcttgtatcaagagagtcattgtaattctactggatggtggagaannnnnnngatcgtaagatcttatgg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
31186638 |
agttgggtaagaacgagggaaatcctcttgtatcaagagagtcattgtaattctaggggatggtggagaatttttttgatcgtaagatcttatgg |
31186544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 268 - 434
Target Start/End: Complemental strand, 31008865 - 31008689
Alignment:
| Q |
268 |
ccattgcctatcttatcacatggaaaaagaaatttgttctactattt------------ttgatacaaatgaaaatgtgttttatcacagatgtgtcatg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
31008865 |
ccattgcctatcttatcacatggaaaaagaaattggttctactatttcacaacattaacttaatacaaatgaa--tgtgttttattacagatgtatcatg |
31008768 |
T |
|
| Q |
356 |
ttctataattttttaaattggctatattctggtgtctgcggcatgttgtatccgtgctttatatttgtgataaatgctt |
434 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
31008767 |
ttctataattttttaaattggccatattctggtgtctgcagcatgttgtatttgtgctatatatttgtgataaatgctt |
31008689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University