View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_high_13 (Length: 432)
Name: NF2705_high_13
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 7260137 - 7260539
Alignment:
| Q |
17 |
aacattatcaacgccgccgttacacctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcagcaaggttagaccttggtcctgctg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7260137 |
aacattatcaacgccgccgttacacctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcagcaaggttagaccttggtcctgctg |
7260236 |
T |
|
| Q |
117 |
gtgttatcccacttcacactcaccctggtgccagtgaacttcttgttgtgacacaaggtcacatcactgctggatttgtttcatcagctaacactgttta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7260237 |
gtgttatcccacttcacactcaccctggtgccagtgaacttcttgttgtgacacaaggtcacatcactgctggatttgtttcatcagctaacactgttta |
7260336 |
T |
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| Q |
217 |
tatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7260337 |
tatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattttcaagctactgctggtaagagaaatgctgttgcttttgctgtt |
7260436 |
T |
|
| Q |
317 |
tttagtagtgctagtcctggacttcagattcttgattttgcactttttgcaagtaacttctctactcctttgatcactaagaccactttccttgatcctg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7260437 |
tttagtagtgctagtcctggacttcagattcttgattttgcactttttgcaagtaacttctctactcctttgatcactaagaccactttccttgatcctg |
7260536 |
T |
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| Q |
417 |
ttc |
419 |
Q |
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||| |
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| T |
7260537 |
ttc |
7260539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 7265988 - 7266052
Alignment:
| Q |
41 |
cctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcagcaaggttagacct |
105 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| | || ||||||| |||||||| |
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| T |
7265988 |
cctgcatttgttaatcaatttccagctgttaatggtcttggtttatcagcagcaaaattagacct |
7266052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 7271025 - 7271066
Alignment:
| Q |
236 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaa |
277 |
Q |
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| T |
7271025 |
ggtgatcttatggtttttccacaagggatgttgcattttcaa |
7271066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 336
Target Start/End: Original strand, 7287283 - 7287383
Alignment:
| Q |
236 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctg |
335 |
Q |
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||||| |||||||||||||| ||||| ||||||||||||||| | | |||||||| |||| ||| ||||||| | |||||||||||| | ||||| |
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| T |
7287283 |
ggtgatcttatggtttttccccaagggatgttgcattttcaagttaattctggtaagggaaaagctactgcttttcttacttttagtagtgcaaatcctg |
7287382 |
T |
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| Q |
336 |
g |
336 |
Q |
| |
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| |
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|
| T |
7287383 |
g |
7287383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 18245901 - 18245990
Alignment:
| Q |
184 |
tgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattt |
273 |
Q |
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|||||| |||||||| || || ||||||||||| || || ||| | | |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
18245901 |
tgctggttttgtttcctctgccaacactgtttacattaaaacactttacaaaggtgatgttatggtttttccacaaggattgttgcattt |
18245990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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