View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_high_15 (Length: 404)
Name: NF2705_high_15
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 25574245 - 25574625
Alignment:
| Q |
7 |
tctttttgctacactttcgctctgttgttgaatgttaatcaccgcattcaactaaacatgttcgatattttcatgccttgtttttagggtttatcctttc |
106 |
Q |
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| T |
25574245 |
tctttttgctacactttcgctctgttgttgaatgttaatcaccgcattcaactaaacatgttcgatattttcatgccttgtttttagggtttatcttttc |
25574344 |
T |
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| Q |
107 |
tcactatttttattcatgcattttaacctgtcttctatcaaaattactcttccnnnnnnngtcattataaaataaaacgaaaatatgttattaagttcgt |
206 |
Q |
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| T |
25574345 |
ttactatttttattcatgcattttaacctgt--tcgatcaaaattactcttccattttttgtcattatgaaataaaacgaaaatatgttattaagttcgt |
25574442 |
T |
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| Q |
207 |
ctatgcatacatttttatattgtaaatgaaattactttcatgtttgtggtagtactgacacctctgatcaaagacgtgtctgagtctgacattgacatga |
306 |
Q |
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| T |
25574443 |
ctatgcatacatttttatattttacatgaaattactttcatgtttgtggtagtactaacacctctgatcaaagacgtgtctgagtctgacattgacatga |
25574542 |
T |
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| Q |
307 |
caccaatacatacatgtgattacgttcaaataatttatttannnnnnnaaattattattcatgtcgatttgtgagctgtgtct |
389 |
Q |
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| T |
25574543 |
caccgatacatacatgtgattacgttcaaataatttatttatttttttaaattattattcatgtcgatttgtgagctgtgtct |
25574625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 9895196 - 9895168
Alignment:
| Q |
318 |
acatgtgattacgttcaaataatttattt |
346 |
Q |
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| T |
9895196 |
acatgtgattacgttcaaataatttattt |
9895168 |
T |
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