View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_high_18 (Length: 346)
Name: NF2705_high_18
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 10293260 - 10293510
Alignment:
| Q |
19 |
tactagtcctttgcctattaaatccttgatagttcgtttttgcttgcaccaatttatctatgcaatgattaaactcagggtgtgattgatatcaaaattg |
118 |
Q |
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| T |
10293260 |
tactagtcctttgcctattaaatccttgatagttcgttttttcttgcaccaatttatctatgcaatgattaaactcagggtgtgattgatatcaaaattg |
10293359 |
T |
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| Q |
119 |
ttaacaaaagttgaactttgaaattgacatataagtagttacgtatttactctaaaaaacaaacaattagtaatagactaataggtgtttttctacc-nn |
217 |
Q |
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| T |
10293360 |
ttaacaaaagttgaactttgaaattgacatataagtagttacatatttactctaaaaaacaaacaattagtaatagactaataggtgtttttctaccaaa |
10293459 |
T |
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| Q |
218 |
nnnnngtctaatataggtgtttatgtactcaaactttaaattatttacaaa |
268 |
Q |
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| T |
10293460 |
aaaaagtataatataggtgtttatgtacgcaaactttaaattatttacaaa |
10293510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 325
Target Start/End: Original strand, 10293529 - 10293559
Alignment:
| Q |
295 |
acaaatgagtccctatattcattgattatat |
325 |
Q |
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| T |
10293529 |
acaaatgagtccctatattcattgattatat |
10293559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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