View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_high_34 (Length: 266)
Name: NF2705_high_34
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 18031562 - 18031817
Alignment:
| Q |
1 |
ttctataggaaccatctctggcatgagatttctccatccactgttaatttgacatcgccgaagaatctcttgtacttccatacagtacttgggttcatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031562 |
ttctataggaaccatctctggcatgagatttctccatccactgttaatttgacatcgccgaagaatctcttgtacttccatacagtacttgggttcatag |
18031661 |
T |
|
| Q |
101 |
tctttgtggcattgcagttctgaaatgtaatgttcaccaggttcatctttaacaagttcatcaatctttgccaagagatgtccgaaatcacgctcaaatt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031662 |
tctttgtggcattgcagttgtgaaatgtaatgttcaccaggttcatctttaacaagttcatcaatctttgccaagagatgtccgaaatcacgctcaaatt |
18031761 |
T |
|
| Q |
201 |
tagttcgtcgaagatcctctgttgttttcctacaatacttgtattcagtgtctgtg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031762 |
tagttcgtcgaagatcctctgttgttttcctacaatacttgtattcagtgtctgtg |
18031817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27401507 - 27401555
Alignment:
| Q |
1 |
ttctataggaaccatctctggcatgagatttctccatccactgttaatt |
49 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
27401507 |
ttctataggaaccacctcaggcatgagatttctccatccactgttaatt |
27401555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26183834 - 26183866
Alignment:
| Q |
1 |
ttctataggaaccatctctggcatgagatttct |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26183834 |
ttctataggaaccatctctggcatgagatttct |
26183866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26624436 - 26624398
Alignment:
| Q |
1 |
ttctataggaaccatctctggcatgagatttctccatcc |
39 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||||| |
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| T |
26624436 |
ttctataggaacaatctcaggcatgagatttctccatcc |
26624398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 18081380 - 18081417
Alignment:
| Q |
2 |
tctataggaaccatctctggcatgagatttctccatcc |
39 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||| |
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| T |
18081380 |
tctataggaacaatttctggcatgagatttctccatcc |
18081417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 26117391 - 26117428
Alignment:
| Q |
2 |
tctataggaaccatctctggcatgagatttctccatcc |
39 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
26117391 |
tctataggaacaatctctggcatgagatttatccatcc |
26117428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 26145395 - 26145432
Alignment:
| Q |
2 |
tctataggaaccatctctggcatgagatttctccatcc |
39 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
26145395 |
tctataggaaccatctcgggcatgagatttctacatcc |
26145432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 26212444 - 26212473
Alignment:
| Q |
4 |
tataggaaccatctctggcatgagatttct |
33 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
26212444 |
tataggaaccatctctggcatgagatttct |
26212473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 26239655 - 26239692
Alignment:
| Q |
2 |
tctataggaaccatctctggcatgagatttctccatcc |
39 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||| |
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| T |
26239655 |
tctataggaacaatctctggcatgagatttatccatcc |
26239692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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