View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_high_48 (Length: 239)
Name: NF2705_high_48
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41967862 - 41968081
Alignment:
| Q |
1 |
acaatggatacagtattaaactatnnnnnnnntgtctcaagcatgtataaaataattttcttttatttcttgaggaaaaactaaacgaatgttgtggtat |
100 |
Q |
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| T |
41967862 |
acaatggatacagtattaaactataaaaaaa-tgtctcaagcatgtataaaataattttcttttatttcttgaggaaaaactaaacgaatgttgtggtat |
41967960 |
T |
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| Q |
101 |
agtacatgatgagaaatgaaaaaacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttcca |
200 |
Q |
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| T |
41967961 |
agtacatgatgagaaatgaaaaaacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttcca |
41968060 |
T |
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| Q |
201 |
taagttcctggaggtacacac |
221 |
Q |
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| T |
41968061 |
taagttcctggaggtacacac |
41968081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 1234954 - 1235089
Alignment:
| Q |
87 |
gaatgttgtggtatagtacatgatgagaaatgaaaa-aacataattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaa |
185 |
Q |
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| T |
1234954 |
gaatgttgtggtatagtacatgatgagaaatgaaaaaaacataattcaaggacattttggtcctccttctttagtcttccagtcgttatagcacggacaa |
1235053 |
T |
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| Q |
186 |
acttccttgtttccataagttcctggaggtacacac |
221 |
Q |
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| T |
1235054 |
acttccttgtttccataagttcctggaggtacacac |
1235089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 1234874 - 1234917
Alignment:
| Q |
34 |
gtctcaagcatgtataaaataattttcttttatttcttgaggaa |
77 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1234874 |
gtctcaaacatgtataaaataattttcttttatttcttgaggaa |
1234917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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