View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2705_high_54 (Length: 235)

Name: NF2705_high_54
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2705_high_54
NF2705_high_54
[»] chr2 (5 HSPs)
chr2 (26-220)||(21624088-21624282)
chr2 (26-87)||(21374742-21374804)
chr2 (26-87)||(26769466-26769527)
chr2 (180-211)||(19281000-19281031)
chr2 (26-77)||(38117202-38117253)
[»] chr4 (4 HSPs)
chr4 (26-87)||(42640481-42640542)
chr4 (26-77)||(7251670-7251721)
chr4 (26-87)||(15029720-15029781)
chr4 (46-83)||(35158054-35158091)
[»] chr3 (5 HSPs)
chr3 (26-87)||(14747516-14747577)
chr3 (26-87)||(21479073-21479134)
chr3 (31-87)||(14027964-14028018)
chr3 (46-87)||(750688-750729)
chr3 (67-95)||(24633478-24633506)
[»] chr1 (6 HSPs)
chr1 (26-87)||(38078704-38078766)
chr1 (26-92)||(3490433-3490499)
chr1 (26-87)||(22881659-22881720)
chr1 (46-87)||(10577804-10577845)
chr1 (26-87)||(17831574-17831635)
chr1 (55-87)||(48548040-48548072)
[»] chr8 (2 HSPs)
chr8 (26-77)||(22595959-22596010)
chr8 (26-87)||(20785508-20785569)
[»] chr6 (5 HSPs)
chr6 (26-87)||(5970151-5970212)
chr6 (26-87)||(7801199-7801255)
chr6 (26-87)||(12868718-12868779)
chr6 (26-92)||(7377929-7377995)
chr6 (26-86)||(3209332-3209397)
[»] chr5 (5 HSPs)
chr5 (26-87)||(15382426-15382493)
chr5 (52-87)||(34276806-34276841)
chr5 (46-87)||(13287468-13287509)
chr5 (51-87)||(20683330-20683366)
chr5 (26-74)||(31084291-31084339)
[»] chr7 (1 HSPs)
chr7 (26-87)||(9778457-9778516)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 21624282 - 21624088
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgt-tgtgtccggtatccgtgtccgtatccgtgcttaataatattacaaaccttttgattagtaaaatttgta 124  Q
    ||||||||||||||||||||||||  |||| ||||||  || || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgt-tcggtgtccgtatccgggcttcataatattacaaaccttttgattagtaaaatttgta 21624184  T
Q  125 annnnnnnnnnnatcacagcaactcatgactgtcataatgacttggattgtggagacaaaattaagtgtgtgcctcctcggattgcagtgtgtatc 220  Q
    |           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  21624183 atatttttttttatcacagcaactcatgactgtcataatgacttggattgtggagacaaaattaagtgtgtgcctcctcggattgcattatgtatc 21624088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 21374742 - 21374804
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgtt-gtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||    
T  21374742 aaattattagctgtgtcggcgtgttagtgtccgtgtccggtgtccgtgtccgtatccgtgctt 21374804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 26769527 - 26769466
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    |||||||||| |||||||||||||  |||| ||||||||| |||||||||||||||||||||    
T  26769527 aaattattagttgtgtcggcgtgtctgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 26769466  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 19281031 - 19281000
Alignment:
Q  180 acaaaattaagtgtgtgcctcctcggattgca 211  Q
    ||||||||||||||||||||||||||||||||    
T  19281031 acaaaattaagtgtgtgcctcctcggattgca 19281000  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 38117202 - 38117253
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgt 77  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||| |||||    
T  38117202 aaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtatccgt 38117253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 42640542 - 42640481
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||| |||||||||||||||| ||||||||||||  | |||||||||||||||||||||    
T  42640542 aaattatcagctgtgtcggcgtgtccgtgttgtgtccaatgtccgtgtccgtatccgtgctt 42640481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 7251670 - 7251721
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgt 77  Q
    |||||||||||||||||||||| |  |||||||||||||| ||||| |||||    
T  7251670 aaattattagctgtgtcggcgtttctgtgttgtgtccggtgtccgtatccgt 7251721  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 15029781 - 15029720
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||| ||||| ||||||  |||| ||||||||| ||| ||||||||||| |||||    
T  15029781 aaattattagcagtgtctgcgtgtcagtgtcgtgtccggtctccatgtccgtatccctgctt 15029720  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 35158054 - 35158091
Alignment:
Q  46 gtgttcgtgttgtgtccggtatccgtgtccgtatccgt 83  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  35158054 gtgtccgtgttgtgtccggtgtccgtgtccgtatccgt 35158091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 14747577 - 14747516
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||| |||||||||||||||    
T  14747577 aaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtatccgtatccgtgctt 14747516  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 21479134 - 21479073
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||||| |||||    
T  21479134 aaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtgtccgtatccatgctt 21479073  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 14028018 - 14027964
Alignment:
Q  31 attagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||||||  ||| ||||| ||||||||| |||||||||||||||||||||    
T  14028018 attagctgtgtcgg--tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 14027964  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 750688 - 750729
Alignment:
Q  46 gtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  750688 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 750729  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 24633478 - 24633506
Alignment:
Q  67 tccgtgtccgtatccgtgcttaataatat 95  Q
    |||||||||||||||||||||||||||||    
T  24633478 tccgtgtccgtatccgtgcttaataatat 24633506  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 38078704 - 38078766
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgtt-gtgtccggtatccgtgtccgtatccgtgctt 87  Q
    |||||||||||||||||| |||||  ||||| ||||||||| |||||||||||||||||||||    
T  38078704 aaattattagctgtgtcgacgtgtcagtgttcgtgtccggtgtccgtgtccgtatccgtgctt 38078766  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 3490433 - 3490499
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgcttaataa 92  Q
    ||||||||||| ||||||||||||  |||| ||||||||| || || ||||||||||||||| ||||    
T  3490433 aaattattagcagtgtcggcgtgtcagtgtcgtgtccggtgtctgtatccgtatccgtgcttcataa 3490499  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 22881659 - 22881720
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    |||||||||| |||||||||||||  |||| ||||||||| ||||||||  |||||||||||    
T  22881659 aaattattagttgtgtcggcgtgtcagtgtcgtgtccggtgtccgtgtctatatccgtgctt 22881720  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 10577804 - 10577845
Alignment:
Q  46 gtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  10577804 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 10577845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 17831574 - 17831635
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||| ||||||||||||  |||| || |||||| || ||||| ||||||||||||    
T  17831574 aaattattagcggtgtcggcgtgtcagtgtcgtatccggtgtctgtgtctgtatccgtgctt 17831635  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 48548040 - 48548072
Alignment:
Q  55 ttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||| |||||||||||||||||||||    
T  48548040 ttgtgtccggtgtccgtgtccgtatccgtgctt 48548072  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 22596010 - 22595959
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgt 77  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||| |||||    
T  22596010 aaattattagctgtgtcggcgtgtcagtgttgtgtccggtgtccgtatccgt 22595959  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 20785508 - 20785569
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||| |||| ||| | | ||||| |||| |||| |||||||||||||||||||||    
T  20785508 aaattattagcggtgttggcatatccgtgtcgtgtacggtgtccgtgtccgtatccgtgctt 20785569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 5970151 - 5970212
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||| |||||||| ||||| |||||  |||||||| |||||||||||||| ||||||    
T  5970151 aaattattaactgtgtcgacgtgtccgtgtcatgtccggtgtccgtgtccgtatctgtgctt 5970212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 7801199 - 7801255
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    |||||||||| |||||||||||||| |||||     ||||||||||||||||||||||||||    
T  7801199 aaattattagttgtgtcggcgtgttagtgtt-----cggtatccgtgtccgtatccgtgctt 7801255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 12868718 - 12868779
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||| ||||||||||||||  |||| ||||||||| |||| |||||||||| |||||    
T  12868718 aaattattaactgtgtcggcgtgtcagtgtcgtgtccggtgtccgagtccgtatccctgctt 12868779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 7377995 - 7377929
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgcttaataa 92  Q
    ||||| ||||| ||||||| ||||  |||||||||||||| || | |||||||||||||||| ||||    
T  7377995 aaatttttagcggtgtcggggtgtctgtgttgtgtccggtgtctgggtccgtatccgtgcttcataa 7377929  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 3209397 - 3209332
Alignment:
Q  26 aaattattagctgtgtcggcgtgt-----tcgtgttgtgtccggtatccgtgtccgtatccgtgct 86  Q
    ||||||||||||||||||||||||     |||||| ||||||||| |||||||  |||||||||||    
T  3209397 aaattattagctgtgtcggcgtgtctgtgtcgtgtcgtgtccggtgtccgtgtttgtatccgtgct 3209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 15382493 - 15382426
Alignment:
Q  26 aaattattagctgtgtcggcgtgtt------cgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||||||||||||||||||||       ||||| ||||||||| |||||||||||||||||||||    
T  15382493 aaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 15382426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 34276841 - 34276806
Alignment:
Q  52 gtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    |||| |||||||||||||||||||||||||||||||    
T  34276841 gtgtcgtgtccggtatccgtgtccgtatccgtgctt 34276806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 13287468 - 13287509
Alignment:
Q  46 gtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  13287468 gtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 13287509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 20683366 - 20683330
Alignment:
Q  51 cgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  20683366 cgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 20683330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 31084339 - 31084291
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtc 74  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||| ||||    
T  31084339 aaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccatgtc 31084291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 9778516 - 9778457
Alignment:
Q  26 aaattattagctgtgtcggcgtgttcgtgttgtgtccggtatccgtgtccgtatccgtgctt 87  Q
    ||||||| ||||||||| |  ||| ||||| ||||||||| |||||||||||||||||||||    
T  9778516 aaattatcagctgtgtcag--tgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgctt 9778457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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