View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_high_59 (Length: 218)
Name: NF2705_high_59
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_59 |
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Alignment Details
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 3960621 - 3960698
Alignment:
| Q |
115 |
aagacagcagcaaggcaaaaacccaaaccgcttgcagagctcccaacggactaatgaaacagtcctaaaaccaaatca |
192 |
Q |
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| T |
3960621 |
aagatagcagcaaggcaaaaacccgaaccgcttgcagagctcccaacggactaatgaaatagtcccaaaaccgaatca |
3960698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 3960230 - 3960307
Alignment:
| Q |
117 |
gacagcagcaaggcaaaaacccaaaccgcttgcagagctcccaacggactaatgaaacagtcctaaaaccaaatcacg |
194 |
Q |
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| T |
3960230 |
gacagcagcaaggcagaaacccgagccgctggcagagctcccaactgactaatgaaacagtcccaaaaccgaatcacg |
3960307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 3960562 - 3960604
Alignment:
| Q |
85 |
ggaaaaaacgcgctcagctctgcgcaaactaagacagcagcaa |
127 |
Q |
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| T |
3960562 |
ggaaaaaacgcgctcagctctgcgcaaactaagacagcagcaa |
3960604 |
T |
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