View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2705_high_60 (Length: 216)
Name: NF2705_high_60
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 28789828 - 28789658
Alignment:
| Q |
18 |
gaaccagaggtagcagcacatggagtggcaaagaagagaacattcaagaagttcagtttccgtggagttgatctcgatgctcttttggatatgcccactg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28789828 |
gaaccagaggtagcagcacatggagtggcaaagaagagaacattcaagaagttcagtttccgtggagttgatctcgatgctcttttggatatgcccactg |
28789729 |
T |
|
| Q |
118 |
atgaacttgtgaagcttttctctgcacgtgcccgaagaaggtttcgacgtggtttaacccgcaagcctatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28789728 |
atgaacttgtgaagcttttctctgcacgtgcccgaagaaggtttcgacgtggtttaacccgcaagcctatg |
28789658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 31246382 - 31246523
Alignment:
| Q |
18 |
gaaccagaggtagcagcacatggagtggcaaagaagagaacattcaagaagttcagtttccgtggagttgatctcgatgctcttttggatatgcccactg |
117 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
31246382 |
gaaccagaggtagcagcacaaggagtgccaaagaagagaacatttaagaagttcagtttccgtggtgttgatctcgatgctctcttggatatgtccactg |
31246481 |
T |
|
| Q |
118 |
atgaacttgtgaagcttttctctgcacgtgcccgaagaaggt |
159 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| || ||||||| |
|
|
| T |
31246482 |
atgaacttgtcaagcttttctcttctcgtgcacgtagaaggt |
31246523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 44327172 - 44327060
Alignment:
| Q |
48 |
aagaagagaacattcaagaagttcagtttccgtggagttgatctcgatgctcttttggatatgcccactgatgaacttgtgaagcttttctctgcacgtg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| | ||||| ||| | || ||| |||||||||| ||||| ||||| ||| ||| |||| |
|
|
| T |
44327172 |
aagaagagaacattcaagaagttcagtttcagaggagttgatttggatgcacttcttgacatgtccactgatgagcttgttaagctcttcagtgctcgtg |
44327073 |
T |
|
| Q |
148 |
cccgaagaaggtt |
160 |
Q |
| |
|
| || |||||||| |
|
|
| T |
44327072 |
ctcgtagaaggtt |
44327060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University