View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_high_9 (Length: 502)
Name: NF2705_high_9
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Complemental strand, 40942709 - 40942233
Alignment:
| Q |
8 |
tcgaagaatatcgtgaataaggataagtttgttccaacattcaatgaaacaaaacctctgatccaaaggatctttaatagaccaccataagtgggaagta |
107 |
Q |
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||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942709 |
tcgaacaaaatcgtgaataaggacaagtttgttccaacattcaatgaaacaaaacctctgatccaaaggatctttaatagaccaccataagtgggaagta |
40942610 |
T |
|
| Q |
108 |
tctgcatgattgattgagataataaaaccaagagcttgtctaacttgtcacactgcaaatcgaaagggcatcaagccattnnnnnnntaaactgcactaa |
207 |
Q |
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| T |
40942609 |
tctgcatgattgattgagataataaaaccaagagcttgtctaacttgtcacattgcaaatcgaaagggcatcaagccattaacaaaataaactgcactaa |
40942510 |
T |
|
| Q |
208 |
gaggatcaaagtatgctatcctttgctgtggttttttgggtgtcaaggttgcaagactattttaaagggaggtgatgggtgatgaatttcctaaacgata |
307 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942509 |
gaggatcaaagtatgatatcctttgctgtggttttttgggtgtcaagattgcaagactattttaaagggaggtgatgggtgatgaatttcctaaacgata |
40942410 |
T |
|
| Q |
308 |
aaagtatagctacaatgtgaaaaaggtagaagtatgaataaaaatgttatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942409 |
aaagtatagctacaatgtgaaaaaggtagaagtatgaataaaaatgttatattgaatatgaacatgacagatgcccataagttttggaatgttcatgcaa |
40942310 |
T |
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| Q |
408 |
catagaccaaaatagcacatcaagattttattgattgaaacaagttttaaaattggaatgaaaaagaacatgtcctt |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40942309 |
catagaccaaaatagcacatcaagattttattgattgaaacaagttttaaaattggaaggaaaaagaacatgtcctt |
40942233 |
T |
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