View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_12 (Length: 436)
Name: NF2705_low_12
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 11892550 - 11892132
Alignment:
| Q |
1 |
aacaaacacaacagggtacaatacaaaaaatcctcaataaaaataaagttatcatacagggaaatatcaatctatgcacatataaatcaaagagataata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11892550 |
aacaaacacaacagggtacaatacaaaaaatcctcaataaaaataaagttatcatacagggaaatatcaatctatgcacatataaatcaaagagataata |
11892451 |
T |
|
| Q |
101 |
aataaattaatctcgcttccacattttgattagccagtcacttgaacacaataagattaggaagtgcaagatggccatcaaataatttggacagaaagct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11892450 |
aataaattaatctcgcttccacattttgattagccagtcacttgaacacaataagattaggaagtgcaagatggccatcaaataatttggacagagagct |
11892351 |
T |
|
| Q |
201 |
agttgtttcactttgctccaaatggacgactttattccttgatgaaaactagaacctgaaaacaaataagagtttttgttgattagtacataaaatttaa |
300 |
Q |
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| T |
11892350 |
agttgtttcactttgctccaaatggacgactttattccttgatgaaaactagaacctgaaaacaaataagagtttttgttgattagtacataaaatttaa |
11892251 |
T |
|
| Q |
301 |
acatgtgatatgtgtgtgtatgggtgggaaaagatgcaagtgttatgattgcaacaatggtaaacttacataatttatcaccaatggtgatttggtgttg |
400 |
Q |
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| T |
11892250 |
acatgtgatatgtgtgtgtatgggtgggaaaagatgcaagtgttatgattgcaataatggtaaacttacataatttatcaccaatggtgatttggtgttg |
11892151 |
T |
|
| Q |
401 |
tgaggctagttgtagattg |
419 |
Q |
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| T |
11892150 |
tgaggctagttgtagattg |
11892132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 11906164 - 11906052
Alignment:
| Q |
70 |
atctatgcacatataaatcaaagagataataaataaattaatctcgcttccacattttgattagccagtcacttgaacacaataagattaggaagtgcaa |
169 |
Q |
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| T |
11906164 |
atctatgcacaaataaatcaaagagatcacaaataaattaatatcgcttccacttcttgatttgtctttcacttgaacccaataagattagaaagtgcaa |
11906065 |
T |
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| Q |
170 |
gatggccatcaaa |
182 |
Q |
| |
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||||||| ||||| |
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| T |
11906064 |
gatggccgtcaaa |
11906052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 11883348 - 11883239
Alignment:
| Q |
73 |
tatgcacatataaatcaaagagataataaataaattaatctcgcttccacattttgattagccagtcacttgaacacaataagattaggaagtgcaagat |
172 |
Q |
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| T |
11883348 |
tatgcacaaataaatcaaagagatcacaaataaattaatctcgcttctcccttttgatttgtctgtcacttgaatagactaagaccaggaagtgcaagat |
11883249 |
T |
|
| Q |
173 |
ggccatcaaa |
182 |
Q |
| |
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|||| |||| |
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| T |
11883248 |
tgccaccaaa |
11883239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 11905929 - 11905832
Alignment:
| Q |
230 |
ctttattccttgatgaaaactagaacctgaaaacaaataagagtttttgttgattagtacataaaatttaaacatgtgatatgtgtgtgtatgggtgg |
327 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| | |||| |||||||| |||||| |||||||| ||| || ||||| || |||||||| |
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| T |
11905929 |
ctttattccttggtgaaagctagaacctgaaaacaaatacaaattttagttgattatcacataagatttaaacgtgttatctgtgtatgcatgggtgg |
11905832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 11905805 - 11905763
Alignment:
| Q |
357 |
atggtaaacttacataatttatcaccaatggtgatttggtgtt |
399 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||| |
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| T |
11905805 |
atggtaaacttacatgatttatcatcaatggtgctttggtgtt |
11905763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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