View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_14 (Length: 410)
Name: NF2705_low_14
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_14 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 36734252 - 36734650
Alignment:
| Q |
1 |
aagggttaaaggaaattagggacaggtttgattctatgatggagaggattatcaaggagcatcaagaagtaaggaggaggagaaaggaagttggtggagg |
100 |
Q |
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| T |
36734252 |
aagggttagaggaaattagggacaggtttgattctatgatggagaggattatcaaggagcatcaagaagtaaggaggaggagaaaagaagttggtggagg |
36734351 |
T |
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| Q |
101 |
agaaggtcaaattaaggatctacttgatattttattggatattcttgaagatgagagctctgaaatcaaattgaaaatggagaacataaaagccttcatc |
200 |
Q |
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| T |
36734352 |
agaaggtcaaattaaggatctacttgatattttattggatattcttgaagatgagagctctgaaatcaaattgaaaatggagaacataaaagccttcatc |
36734451 |
T |
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| Q |
201 |
ttggtaagtgacaagtgactcagatttacattatatgcac------tcgtattttgattttgtttttaaaatataattggcgaacttgaaacatgaaact |
294 |
Q |
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| T |
36734452 |
ttggtaagtgacaagtgactcagatttacattatatgcactctagatcgtattttgattttgtttttaaaatataattggcgaacttgaaacatgaaact |
36734551 |
T |
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| Q |
295 |
tcttatcttaatctaacagccgtgatcattgattgacttacatagtcgatatctagttgagtctatgaacaatattgcatttttcttttattcacttat |
393 |
Q |
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| T |
36734552 |
tcttatcttgatctaacggccgtgatcattgattgacttaaatagtcgatatctagttacgtctacgaccaatattgcattttccttttatttacttat |
36734650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 24587 - 24649
Alignment:
| Q |
112 |
ttaaggatctacttgatattttattggatattcttgaagatgagagctctgaaatcaaattga |
174 |
Q |
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| T |
24587 |
ttaaggatttgcttgatattttgttggaaattcatgaagatgagagcagtgaaataaaattga |
24649 |
T |
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