View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_15 (Length: 404)
Name: NF2705_low_15
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_15 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 2156787 - 2157163
Alignment:
| Q |
15 |
aataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaatactaagttgataatgagaatattgcaacttttt |
114 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||| |||| |
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| T |
2156787 |
aataacatacttgatgttaataaaagatcctttacacgaaggttggcttgagatttcgcgtaaaaatactaagttgataagaagaatattgcaacctttt |
2156886 |
T |
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| Q |
115 |
tggatttgattcgatggatgtttatcattacacacatgaaggagtagccgtatgagatgaaagggcttcttataattttttgcgtgacgtcttccttaca |
214 |
Q |
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| T |
2156887 |
tggatttgattcgatg-atgtttatcattacacacatgaaggagtagccgtatgagatgaaagggcttcttataattttttgcgtgacgtcttcattaga |
2156985 |
T |
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| Q |
215 |
accaacttccctcaaagaataactcacataggcgtgcgtggcattcttcaacataatttt-ttgtgtcagtgtttgtagtttggaggaatcggtggaaga |
313 |
Q |
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| T |
2156986 |
accaacttccctcaaa--ataactcacataggcgtgcgtggcattcttcaacataatttttttgtgtcagtgtttgtagtttggaggaatcggtggaaga |
2157083 |
T |
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| Q |
314 |
tctgtttttatcttctcattttggttctatttggcaacttcttcaatgatggattggtacatcggcggttgatcctctct |
393 |
Q |
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| T |
2157084 |
tctgtttttatcttctcattttggttctatttggcaacttcttcaatgatggattggtacatcggcggttgatcctctct |
2157163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 8882 - 8711
Alignment:
| Q |
15 |
aataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaatacta---------agttgataatgagaatattg |
105 |
Q |
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| T |
8882 |
aataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttgataatgagaatattg |
8783 |
T |
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| Q |
106 |
caa-cttttttggatttgattcgatggatgtttatcattacacacatgaaggagtagccgtatgagatgaaa |
176 |
Q |
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||| |||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||| |
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| T |
8782 |
caatcttttttggatttgattccatggatgtttatcattatacacataaaggaggagccgtatgagatgaaa |
8711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 4639235 - 4639405
Alignment:
| Q |
15 |
aataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaatacta---------agttgataatgagaatattg |
105 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
4639235 |
aataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttgataatgagaatattg |
4639334 |
T |
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| Q |
106 |
caacttttttggatttgattcgatggatgtttatcattacacacatgaaggagtagccgtatgagatgaaa |
176 |
Q |
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| T |
4639335 |
caatctttttggatttgattccatggatgtttatcattatacacataaaggaggagccgtatgagatgaaa |
4639405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 18179884 - 18179714
Alignment:
| Q |
15 |
aataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaatacta---------agttgataatgagaatattg |
105 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
18179884 |
aataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatactagtcccgctaagttgataatgagaatattg |
18179785 |
T |
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| Q |
106 |
caacttttttggatttgattcgatggatgtttatcattacacacatgaaggagtagccgtatgagatgaaa |
176 |
Q |
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| T |
18179784 |
caatctttttggatttgattccatggatgtttatcattatacacataaaggaggagccgtatgagatgaaa |
18179714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 46144340 - 46144270
Alignment:
| Q |
15 |
aataacatacttgatattaataaaagatcctttacatgaaggttggctagagatttagtgtaaaaatacta |
85 |
Q |
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| T |
46144340 |
aataacatacttgatgttaataaaagatcctttacaggaaggttggctagagatttcgtgtaaaaatacta |
46144270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 14962693 - 14962762
Alignment:
| Q |
83 |
ctaagttgataatgagaatattgcaa-cttttttggatttgattcgatggatgtttatcattacacacat |
151 |
Q |
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| T |
14962693 |
ctaagttgatgatgagaatgttgtaatcttttttggatttgattcgattgatgcttatcattacacacat |
14962762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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