View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_18 (Length: 366)
Name: NF2705_low_18
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 202 - 357
Target Start/End: Original strand, 7835503 - 7835661
Alignment:
| Q |
202 |
gactctatcaatccgactcaagcattctctaaccttccttaccgacaccctcgccccaatc---ctctaacattccaacagcatactatcattaatcact |
298 |
Q |
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| T |
7835503 |
gactctatcaatccgactcaagcattctctaaccttccttaccgacaccctcgccccaatcatcctctaacattccaacagcatactatcattaatcact |
7835602 |
T |
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| Q |
299 |
tgcttcttaaaacaaaacgttgagcacttcatccctttcttcttccaaagtatcctttg |
357 |
Q |
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| T |
7835603 |
tgcttcttcaaacaaaacgttgagcacttcatccctttcttcttccaaagtatcctttg |
7835661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 7834785 - 7834941
Alignment:
| Q |
18 |
agggaccacttctcaaacttttttcaataacataattaaattctctattagcaagccaataattatgagacagaatttctcaggaccccgatcatggtaa |
117 |
Q |
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| T |
7834785 |
agggaccatttctcaaacttctttcaataacataattaaattctttattagcaagccaataattatgagacggaatttctcaagaccccaatcatggtaa |
7834884 |
T |
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| Q |
118 |
taataacgatttacaattgggatatgatccgacaaatctctattcaactcccaaaca |
174 |
Q |
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| T |
7834885 |
taataacgatttacaattgggatatgatccgataaatctctattcaactcccaaaca |
7834941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 7864195 - 7864337
Alignment:
| Q |
18 |
agggaccacttctcaaacttttttcaataacataattaaattctctat-tagcaagccaataattatgagacagaatttctcaggaccccgatcatggta |
116 |
Q |
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| T |
7864195 |
agggaccatttctccaacttctttcaataataaaattaaattatttatatagcaagccaataattatgatacggaatttcttaggaccccaatcatggta |
7864294 |
T |
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| Q |
117 |
ataataacgatttacaattgggatatgatccgacaaatctcta |
159 |
Q |
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| T |
7864295 |
atcctaacgccttacaattgggaaatgatccgacacatctcta |
7864337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 7834959 - 7834990
Alignment:
| Q |
178 |
tagtagccattgatgggaaatcaagactctat |
209 |
Q |
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| T |
7834959 |
tagtagccattgatgggaaatcaagactctat |
7834990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 7865019 - 7865049
Alignment:
| Q |
324 |
acttcatccctttcttcttccaaagtatcct |
354 |
Q |
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| T |
7865019 |
acttcatccctttcttcttccaaagtatcct |
7865049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 7864361 - 7864406
Alignment:
| Q |
181 |
tagccattgatgggaaatcaagactctatcaatccgactcaagcat |
226 |
Q |
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| T |
7864361 |
tagccattgattagaaaccaagactctatcaatctgactcaagcat |
7864406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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