View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_21 (Length: 346)
Name: NF2705_low_21
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 38900275 - 38900614
Alignment:
| Q |
1 |
tctttgtgctgcaaccatttcatcactcttgaaaggtccttttgaccccctcaaggcacttgagattgaggttgatctcaccctccaacaagccaagagt |
100 |
Q |
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| T |
38900275 |
tctttgtgctgcaactatttcatcactcttgaaaggtccttttgaccccctcaaggcacttgagattgaggttgatctcaccctccaacaagccaagagt |
38900374 |
T |
|
| Q |
101 |
gtagctgctatcattacagagttgcttaaagaccctagtaccgacaaaaaagcaatcaaggctctcgagatatgccaaacacaatacaaatcaatgcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38900375 |
gtagctgctatcattacagagttgcttaaagaccctagtaccgacaaaaaagcagtcaaggctctcgagatatgccaaacacaatacaaatcaatgctgg |
38900474 |
T |
|
| Q |
201 |
atgcaatcaatgagacagttgagttacttggacaacacaatgtcgtggactctttttacaagttcagttctgtgatatcttacaaaactacatgtgagga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38900475 |
atgcaatcaatgagacagttgagttacttggacaacacaatgtcgtggactctttttacaagttcagttctgtgatatcatacaaaactacatgtgagga |
38900574 |
T |
|
| Q |
301 |
tgcttttgtgaaatctcctggagttggaatgccatattct |
340 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||| |
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| T |
38900575 |
tgcttttgtgaaatctcctggagttgaaatgccattttct |
38900614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 38898137 - 38898476
Alignment:
| Q |
1 |
tctttgtgctgcaaccatttcatcactcttgaaaggtccttttgaccccctcaaggcacttgagattgaggttgatctcaccctccaacaagccaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
38898137 |
tctttgtgctgcaaccatttcatcactcttgaaaggtccttttgaccccctcaaggcacttgagattgaggttgatttcaccctcaaacaagccaagagt |
38898236 |
T |
|
| Q |
101 |
gtagctgctatcattacagagttgcttaaagaccctagtaccgacaaaaaagcaatcaaggctctcgagatatgccaaacacaatacaaatcaatgcttg |
200 |
Q |
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||||||||||||||||||| ||||||||| ||||||| |||||||||||||| || || ||||| |||||||||||| ||||||||| |||||||| | |
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| T |
38898237 |
gtagctgctatcattacagcgttgcttaatgaccctaacaccgacaaaaaagccatgaaagctcttcagatatgccaaatacaatacaattcaatgctgg |
38898336 |
T |
|
| Q |
201 |
atgcaatcaatgagacagttgagttacttggacaacacaatgtcgtggactctttttacaagttcagttctgtgatatcttacaaaactacatgtgagga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38898337 |
atgcaatcaatgagacagttgagttacttggacaacacaatgtcgtggactctttttacaagttcagttctgtgatatcatacaaaactacatgtgagga |
38898436 |
T |
|
| Q |
301 |
tgcttttgtgaaatctcctggagttggaatgccatattct |
340 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||| |||| |
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| T |
38898437 |
tgcttttgtgaaatctcctggagttgaaataccattttct |
38898476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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