View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_25 (Length: 310)
Name: NF2705_low_25
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 5744684 - 5744425
Alignment:
| Q |
6 |
atttcgcttctcaaattgaga--aattcactttagaatactacaaataaaaaa-tttaagccttaactatggttgattttctcataaaaaattatcacat |
102 |
Q |
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| T |
5744684 |
atttcgcttctcaaattgagataaattcactttagaatactacaaataaaaaaatttaagccttaggaaa---ttaggtaccca--aaaaattatcacat |
5744590 |
T |
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| Q |
103 |
tacttaatttatactctaaagctaataacagaaattaggtacccaaaaaatcagcaacggttctgccattggaaaatcttcccgttggacctctagggaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744589 |
tacttaatttatactctaaagctaataacagaaattaggtacccaaaaaatcggcaacggttctgccattggaaaatcttcccgttggacctctagggaa |
5744490 |
T |
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| Q |
203 |
atcaactccataaggtaagaaatttgctctcgctaaagttggaagaaaattattatttccattgt |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5744489 |
atcaactccataaggtaagaaatttgctctcgctaaagttggaagaaaattattattgccattgt |
5744425 |
T |
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