View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_33 (Length: 277)
Name: NF2705_low_33
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4748952 - 4748692
Alignment:
| Q |
1 |
ttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagggta |
100 |
Q |
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| T |
4748952 |
ttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagggta |
4748853 |
T |
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| Q |
101 |
tcctggcttgagatgttcctcgtcttttagtacattacgacatgtttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcctgtacata |
200 |
Q |
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| T |
4748852 |
tcctggcttgagatgttcctcgtcttttagtacattacgacatgtctctggcgagcaaactatgacggttggatacccaaacaaatgtgtcctgtacata |
4748753 |
T |
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| Q |
201 |
cctgtcctgccatatctgtattttataaaataaaaaccatccaaagttagtcacatttatg |
261 |
Q |
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| T |
4748752 |
cctgtcctgccatatctgtattttataaaataaaaaccatccaaagttagtcacatttatg |
4748692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 4756742 - 4756571
Alignment:
| Q |
46 |
ttgatattccatggaatgattttttccctgcaagtgccatagctgaagcagggtatcctggcttgagatgttcctcgtcttttagtacattacgacatgt |
145 |
Q |
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| T |
4756742 |
ttgagattccatggaatgatcttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgt |
4756643 |
T |
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| Q |
146 |
ttctggcgagcaaactatgatggttggatacccaaacaaatgtgtcctgtacatacctgtcctgccatatct |
217 |
Q |
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| T |
4756642 |
ctctggtgtgcatactatgatgcttggactaccaaacaaatgtgttctatacatacctgtctttccatatct |
4756571 |
T |
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