View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2705_low_34 (Length: 272)

Name: NF2705_low_34
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2705_low_34
NF2705_low_34
[»] chr5 (3 HSPs)
chr5 (1-256)||(41889731-41889994)
chr5 (42-116)||(41901850-41901924)
chr5 (159-192)||(32267307-32267340)
[»] chr8 (2 HSPs)
chr8 (152-252)||(27922333-27922433)
chr8 (42-120)||(27922218-27922296)
[»] chr4 (5 HSPs)
chr4 (160-228)||(640748-640816)
chr4 (152-203)||(7226106-7226157)
chr4 (152-226)||(546738-546812)
chr4 (152-198)||(7307685-7307731)
chr4 (159-205)||(55505326-55505372)
[»] chr1 (2 HSPs)
chr1 (155-196)||(43634025-43634066)
chr1 (155-195)||(9580897-9580937)
[»] chr3 (1 HSPs)
chr3 (160-208)||(514946-514994)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 41889994 - 41889731
Alignment:
Q  1 aaggactaatctcaagttgatgatggaacacttattaagagtacattttaaagctcaaactttagcagaa---------cactttaagaaagctagcaaa 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  41889994 aaggactaatctcaagttgatgatggaacacttattaagagtacattttaaagctcaaactttagcagaagctgcagaacactttaagaaagctagcaaa 41889895  T
Q  92 caagacatccatgaagcaagaagtatttcttatctttgtcacttaaacaaaaaacgaatcggagctattatctttctcaatgacggccttgaagatacca 191  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  41889894 caagacatccatgaagcaagaagtatttcttatctttgtcagttaaacaaaaa-cgaatcggagctattatctttctcaatgacagccttgaagatacca 41889796  T
Q  192 ttgaggccacaacattaccatttactttatgacaaccatccaaactgatcattctcagttgcgtg 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41889795 ttgaggccacaacattaccatttactttatgacaaccatccaaactgatcattctcagttgcgtg 41889731  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 41901924 - 41901850
Alignment:
Q  42 tacattttaaagctcaaactttagcagaacactttaagaaagctagcaaacaagacatccatgaagcaagaagta 116  Q
    ||||||| | ||||||||||| ||||||| |||| ||||| |||||| |||||| ||||||||| ||||||||||    
T  41901924 tacatttcagagctcaaacttcagcagaagacttcaagaatgctagcgaacaaggcatccatgacgcaagaagta 41901850  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 32267307 - 32267340
Alignment:
Q  159 ttatctttctcaatgacggccttgaagataccat 192  Q
    ||||||||||||| ||||||||||||||||||||    
T  32267307 ttatctttctcaacgacggccttgaagataccat 32267340  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 27922333 - 27922433
Alignment:
Q  152 ggagctattatctttctcaatgacggccttgaagataccattgaggccacaacattaccatttactttatgacaaccatccaaactgatcattctcagtt 251  Q
    |||||| |||||| |||||| || ||||||||||||||||| || |  |||| |||| ||| |||||||||||||||||||||||| ||| |||||||||    
T  27922333 ggagctgttatctgtctcaacgatggccttgaagataccatcgaagaaacaatattagcatgtactttatgacaaccatccaaactaatctttctcagtt 27922432  T
Q  252 g 252  Q
    |    
T  27922433 g 27922433  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 27922218 - 27922296
Alignment:
Q  42 tacattttaaagctcaaactttagcagaacactttaagaaagctagcaaacaagacatccatgaagcaagaagtatttc 120  Q
    ||||||| | ||||||||||| ||||||| |||| || || ||||||||||||| ||||| ||| ||||||||||||||    
T  27922218 tacatttcagagctcaaacttcagcagaagacttcaacaatgctagcaaacaaggcatccttgacgcaagaagtatttc 27922296  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 640748 - 640816
Alignment:
Q  160 tatctttctcaatgacggccttgaagataccattgaggccacaacattaccatttactttatgacaacc 228  Q
    ||||||||||||||| ||||||||| ||||||||||| | || |||||| |||| ||||||| ||||||    
T  640748 tatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaacc 640816  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 7226157 - 7226106
Alignment:
Q  152 ggagctattatctttctcaatgacggccttgaagataccattgaggccacaa 203  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  7226157 ggagcaattatctttctcaatgatggccttgaagaaaccattgaggcaacaa 7226106  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 546738 - 546812
Alignment:
Q  152 ggagctattatctttctcaatgacggccttgaagataccattgaggccacaacattaccatttactttatgacaa 226  Q
    ||||||||||||||||||||||| |||||| || ||| |||||| || ||  ||||| |||| ||||||| ||||    
T  546738 ggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattacaa 546812  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 7307685 - 7307731
Alignment:
Q  152 ggagctattatctttctcaatgacggccttgaagataccattgaggc 198  Q
    ||||| ||||||||||||||||| |||||||||||||| ||| ||||    
T  7307685 ggagcaattatctttctcaatgatggccttgaagatacaattaaggc 7307731  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 55505372 - 55505326
Alignment:
Q  159 ttatctttctcaatgacggccttgaagataccattgaggccacaaca 205  Q
    |||||||||||||||| ||||||||| ||||||||||| | ||||||    
T  55505372 ttatctttctcaatgatggccttgaaaataccattgagtcaacaaca 55505326  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 43634025 - 43634066
Alignment:
Q  155 gctattatctttctcaatgacggccttgaagataccattgag 196  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  43634025 gctattatctttctcaatgatggccttgaaaataccattgag 43634066  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 9580897 - 9580937
Alignment:
Q  155 gctattatctttctcaatgacggccttgaagataccattga 195  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  9580897 gctattatctttctcaacgatggccttgaagataccattga 9580937  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 514994 - 514946
Alignment:
Q  160 tatctttctcaatgacggccttgaagataccattgaggccacaacatta 208  Q
    ||||||||||||||| ||||||||| ||||||||| ||| |||||||||    
T  514994 tatctttctcaatgatggccttgaaaataccattggggcaacaacatta 514946  T

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