View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_41 (Length: 257)
Name: NF2705_low_41
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42089407 - 42089173
Alignment:
| Q |
1 |
atgagttagaaaagttatcatataaatttataattaggaatggagacaaatgcaattccttcattaaaacacgtgtacagagcaacatttgactgagcca |
100 |
Q |
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| T |
42089407 |
atgagttagaaaagttatcatataagtttataattaggaatggtgacaaatgcaattccttcattaaa-cacgtgtacagagcagcatttgactgagcca |
42089309 |
T |
|
| Q |
101 |
tcaaactatgagtagaaagtgtctcttgtcctaattacattagccctttgctatcagatgtttcaataaaacaaaaaatctagtctcagcgatctacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42089308 |
tcaaactatgagtagaaagtgtctcttgtcctaattacattagccctttgctatcagatgtttcaataaaacaaaaaatctagtctcagcgatctacatt |
42089209 |
T |
|
| Q |
201 |
tcgacacctaattaacttaagaataatgacatgaga |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42089208 |
tcgacacctaattaacttaagaataatgacatgaga |
42089173 |
T |
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