View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_42 (Length: 255)
Name: NF2705_low_42
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37727786 - 37728024
Alignment:
| Q |
1 |
gtttgttccatttttctagaaattgttccatgttttaatctcatcccgtgaacaccttagatctggtatcatctaaatcttcacaacacaatatctgtaa |
100 |
Q |
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| T |
37727786 |
gtttgttccatttttctagaaattgttccatgttttaatctcatcctgtgaacaccttagatctggtatcatctaaatcttcacaacacaatatctgtaa |
37727885 |
T |
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| Q |
101 |
ttttttgcaaaactaagtcacgcagagacacccataatcaaaatcttactttcctccatgtctccattgttggttcagaggaattcgaaaggttgatgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37727886 |
ttttttgcaaaactaagtcacgcagagacacccataatcaaaatcttactttcctccatgtctccattgttggttcagaggaattcgaaaggttgatgca |
37727985 |
T |
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| Q |
201 |
ccttcataacctctattgctcatgtgaccttccattctt |
239 |
Q |
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| T |
37727986 |
ccttcataacctctattgctcatgtgaccttccattctt |
37728024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 33240361 - 33240591
Alignment:
| Q |
9 |
catttttctagaaattgttccatgttttaatctcatcccgtgaacaccttagatctggtatcatctaaatcttcacaacacaatatctgtaattttttgc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33240361 |
catttttctagaaattgttccatgttttaatctcatcttgtgaacaccttagatctggtatcatctaaatcttcacaacacaatatctgtaattttttgc |
33240460 |
T |
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| Q |
109 |
aaaactaagtcacgcagagacacccataatcaaaatcttactttcctccatgtctccattgttggttcagaggaattcgaaaggttgatgcaccttcata |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
33240461 |
aaaactaagtcacgcagagacacccataatcaaaatcttactttcctccatgtctccattgttggttcaaaggaattcgaaaggttgatgcaccgtcata |
33240560 |
T |
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| Q |
209 |
acctctattgctcatgtgaccttccattctt |
239 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33240561 |
acctctattgctcatgtgaccttccattctt |
33240591 |
T |
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