View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_44 (Length: 250)
Name: NF2705_low_44
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_44 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 43741656 - 43741899
Alignment:
| Q |
7 |
ggagcagagagatgtgtgaagacgcggcgtttgtggcggcgatactgaataagattcggaatgtatcgaacgttgcgacggagcacgcagtaacgacgct |
106 |
Q |
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| T |
43741656 |
ggagaagagagatgtgtgaagacgcggcgtttgtggcggcgatactgaataagattcggaatgtatcgaacgttgcgacggagcacgcagtaacgacgct |
43741755 |
T |
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| Q |
107 |
gtggagtgtttgttatctgtttcgcgatcagaaagcacaagaagcggttacgatggcaaatggattaaagaagatattgttgcttatacaaaggaattgt |
206 |
Q |
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| T |
43741756 |
gtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaagatattgttgctaatacagagtaattgt |
43741855 |
T |
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| Q |
207 |
tctccacaagttcgccaaatgtgtacggatttgcttaagatttt |
250 |
Q |
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| T |
43741856 |
tctccacaagttcgccaaatgtgtacggatttgcttaagatttt |
43741899 |
T |
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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 38936241 - 38936410
Alignment:
| Q |
81 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcagaaagcacaagaagcggttacgatggcaaatggattaaagaaga |
180 |
Q |
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| T |
38936241 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
38936340 |
T |
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| Q |
181 |
tattgttgcttatacaaaggaattgttctccacaagttcgccaaatgtgtacggatttgcttaagatttt |
250 |
Q |
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| T |
38936341 |
ttttgcttctgatgcaaagtaattgttcgccacaagttcgtcaaatgtctgtagatttgcttaagatttt |
38936410 |
T |
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