View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_48 (Length: 242)
Name: NF2705_low_48
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10270100 - 10270332
Alignment:
| Q |
1 |
tatatctttaccatttccatttggaatca----tcacttcgtcaagattataaaactttgtgatgatttgttttgatccaccaggatatggccactccat |
96 |
Q |
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| T |
10270100 |
tatatctttaccatttccatttggaattaattatcacttcgtcaagattataaaactttgtgatgatttgttttgattcaccaggatatggtcactccat |
10270199 |
T |
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| Q |
97 |
tatttgtctgggaaatattgctcttgcatctttctcttcctccaaaatccatataagctagtactactcatcttgcgtcaaagagagtaacctacgttat |
196 |
Q |
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| T |
10270200 |
tatttgtctgggaaatattgctcttgcatctttctcttcctccaaaatccatataagctagtactactcatcttgcctcaaagagagtaacctacgttat |
10270299 |
T |
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| Q |
197 |
attggtctcttcaagggcttgttccacttctat |
229 |
Q |
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| T |
10270300 |
attggtctcttcaagggcttgttccacttctat |
10270332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 10238464 - 10238563
Alignment:
| Q |
6 |
ctttaccatttccatttggaatcatcacttcgtcaagattataaaactttgtgatgatttgttttgatccaccaggatatggccactccattatttgtct |
105 |
Q |
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|||| ||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||| | |||||||| |
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| T |
10238464 |
ctttgccatttccatttgaaatcatcacttcatcaagattagagaactttgtgatgatttgttttgatccaccaagatgtggccactccctcatttgtct |
10238563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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