View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2705_low_5 (Length: 574)

Name: NF2705_low_5
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2705_low_5
NF2705_low_5
[»] chr2 (31 HSPs)
chr2 (119-430)||(45414532-45414841)
chr2 (19-119)||(15930901-15931001)
chr2 (1-120)||(13067136-13067255)
chr2 (24-121)||(40915477-40915574)
chr2 (503-574)||(31751065-31751136)
chr2 (506-574)||(12890178-12890246)
chr2 (68-121)||(4814602-4814654)
chr2 (507-574)||(8912844-8912911)
chr2 (504-540)||(8782463-8782499)
chr2 (507-539)||(12872986-12873018)
chr2 (505-540)||(41422510-41422545)
chr2 (505-539)||(2199976-2200010)
chr2 (506-540)||(12360456-12360490)
chr2 (505-539)||(23083513-23083547)
chr2 (506-540)||(26322297-26322331)
chr2 (502-540)||(34062669-34062707)
chr2 (502-540)||(39833734-39833772)
chr2 (506-540)||(41494626-41494660)
chr2 (507-540)||(2060316-2060349)
chr2 (507-540)||(2200244-2200277)
chr2 (507-540)||(3095299-3095332)
chr2 (507-540)||(7116303-7116336)
chr2 (68-121)||(9059899-9059951)
chr2 (507-540)||(18374708-18374741)
chr2 (507-540)||(24345682-24345715)
chr2 (507-540)||(28566151-28566184)
chr2 (507-540)||(32712792-32712825)
chr2 (504-540)||(3904455-3904491)
chr2 (504-540)||(6027615-6027651)
chr2 (507-539)||(13215825-13215857)
chr2 (504-540)||(16108212-16108248)
[»] chr4 (33 HSPs)
chr4 (1-121)||(42998618-42998738)
chr4 (1-121)||(42999211-42999331)
chr4 (24-121)||(50232993-50233090)
chr4 (505-574)||(41191598-41191667)
chr4 (11-121)||(43605582-43605691)
chr4 (507-574)||(17339078-17339145)
chr4 (504-574)||(4415962-4416032)
chr4 (504-574)||(49228688-49228758)
chr4 (502-574)||(51335788-51335860)
chr4 (507-574)||(29520134-29520201)
chr4 (507-574)||(36990914-36990981)
chr4 (507-539)||(14794027-14794059)
chr4 (504-540)||(46949989-46950025)
chr4 (505-540)||(18872715-18872750)
chr4 (505-540)||(20455185-20455220)
chr4 (506-571)||(28501359-28501424)
chr4 (505-540)||(32899222-32899257)
chr4 (505-539)||(21265218-21265252)
chr4 (505-539)||(30523762-30523796)
chr4 (506-540)||(49793090-49793124)
chr4 (506-540)||(52870643-52870677)
chr4 (506-540)||(56432517-56432551)
chr4 (507-540)||(7698473-7698506)
chr4 (507-540)||(25124250-25124283)
chr4 (507-540)||(31937076-31937109)
chr4 (507-540)||(39670990-39671023)
chr4 (507-540)||(49373697-49373730)
chr4 (507-540)||(53564360-53564393)
chr4 (507-540)||(55563131-55563164)
chr4 (504-540)||(3085442-3085478)
chr4 (496-540)||(9328244-9328288)
chr4 (506-538)||(29508597-29508629)
chr4 (512-540)||(50424858-50424886)
[»] chr5 (27 HSPs)
chr5 (6-121)||(29632579-29632694)
chr5 (1-120)||(21654547-21654666)
chr5 (24-120)||(21012013-21012109)
chr5 (505-574)||(7940450-7940519)
chr5 (506-574)||(20142229-20142297)
chr5 (502-540)||(38371979-38372017)
chr5 (507-574)||(23286444-23286511)
chr5 (504-540)||(3028010-3028046)
chr5 (504-540)||(23260142-23260178)
chr5 (506-540)||(7734832-7734866)
chr5 (506-540)||(8949811-8949845)
chr5 (506-540)||(14435829-14435863)
chr5 (502-540)||(14913643-14913681)
chr5 (506-540)||(32147555-32147589)
chr5 (507-571)||(43060384-43060448)
chr5 (507-540)||(4976294-4976327)
chr5 (11-52)||(10641659-10641700)
chr5 (507-540)||(19571943-19571976)
chr5 (507-540)||(23092644-23092677)
chr5 (503-540)||(26894877-26894914)
chr5 (504-540)||(6673232-6673268)
chr5 (504-540)||(13759451-13759487)
chr5 (504-540)||(15520730-15520766)
chr5 (503-539)||(16440927-16440963)
chr5 (504-540)||(22657765-22657801)
chr5 (505-533)||(30183112-30183140)
chr5 (504-540)||(39971011-39971047)
[»] chr8 (22 HSPs)
chr8 (11-118)||(5242660-5242766)
chr8 (502-574)||(23487059-23487131)
chr8 (505-574)||(18111945-18112014)
chr8 (507-574)||(5162304-5162371)
chr8 (507-574)||(32522813-32522880)
chr8 (504-540)||(12802608-12802644)
chr8 (505-540)||(2152244-2152279)
chr8 (506-540)||(23688169-23688203)
chr8 (506-540)||(29598223-29598257)
chr8 (507-540)||(6050559-6050592)
chr8 (507-540)||(17069848-17069881)
chr8 (507-540)||(17578392-17578425)
chr8 (507-540)||(18641384-18641417)
chr8 (504-571)||(18754141-18754208)
chr8 (507-540)||(30140122-30140155)
chr8 (503-540)||(38781145-38781182)
chr8 (507-540)||(38878721-38878754)
chr8 (506-539)||(44580615-44580648)
chr8 (507-540)||(44888680-44888713)
chr8 (507-540)||(45283796-45283829)
chr8 (504-540)||(26016566-26016602)
chr8 (504-540)||(40530410-40530446)
[»] scaffold0421 (1 HSPs)
scaffold0421 (19-120)||(4569-4670)
[»] chr1 (32 HSPs)
chr1 (11-119)||(39179965-39180073)
chr1 (1-118)||(48538558-48538675)
chr1 (24-121)||(24535404-24535501)
chr1 (506-574)||(6089734-6089802)
chr1 (507-574)||(48067865-48067932)
chr1 (504-574)||(9413295-9413365)
chr1 (502-540)||(25509204-25509242)
chr1 (507-574)||(21631077-21631144)
chr1 (507-539)||(47296550-47296582)
chr1 (504-574)||(52431144-52431214)
chr1 (506-571)||(27037268-27037333)
chr1 (505-540)||(28885840-28885875)
chr1 (506-540)||(5765994-5766028)
chr1 (506-540)||(7763753-7763787)
chr1 (506-540)||(17483732-17483766)
chr1 (506-540)||(22940560-22940594)
chr1 (506-540)||(42276165-42276199)
chr1 (507-540)||(3549032-3549065)
chr1 (507-540)||(4280130-4280163)
chr1 (506-539)||(4389607-4389640)
chr1 (506-539)||(11907235-11907268)
chr1 (507-540)||(14171542-14171575)
chr1 (507-540)||(25227304-25227337)
chr1 (507-540)||(27037534-27037567)
chr1 (503-536)||(33244917-33244950)
chr1 (503-536)||(33265090-33265123)
chr1 (507-540)||(38613740-38613773)
chr1 (507-540)||(41317593-41317626)
chr1 (507-540)||(43456625-43456658)
chr1 (504-540)||(39362931-39362967)
chr1 (504-540)||(39750118-39750154)
chr1 (504-540)||(41317857-41317893)
[»] chr7 (19 HSPs)
chr7 (11-121)||(18478629-18478739)
chr7 (31-121)||(18418404-18418494)
chr7 (67-121)||(23485479-23485532)
chr7 (503-574)||(38858294-38858365)
chr7 (507-540)||(49045124-49045157)
chr7 (504-540)||(2290020-2290056)
chr7 (504-540)||(29176989-29177025)
chr7 (505-540)||(27813494-27813529)
chr7 (505-574)||(33682712-33682781)
chr7 (501-539)||(1574713-1574751)
chr7 (506-540)||(33381577-33381611)
chr7 (506-540)||(34012521-34012555)
chr7 (506-540)||(41444201-41444235)
chr7 (507-540)||(18113170-18113203)
chr7 (507-540)||(31581677-31581710)
chr7 (507-540)||(32118167-32118200)
chr7 (506-539)||(42541864-42541897)
chr7 (502-534)||(6799556-6799588)
chr7 (504-540)||(20075111-20075147)
[»] chr6 (25 HSPs)
chr6 (11-122)||(7015463-7015574)
chr6 (11-117)||(5169674-5169780)
chr6 (504-574)||(402591-402661)
chr6 (506-574)||(13321296-13321364)
chr6 (506-574)||(25045613-25045681)
chr6 (505-540)||(23604458-23604493)
chr6 (506-540)||(4175241-4175275)
chr6 (506-540)||(13901640-13901674)
chr6 (506-540)||(15498628-15498662)
chr6 (506-540)||(16122518-16122552)
chr6 (506-540)||(19097805-19097839)
chr6 (507-571)||(31091445-31091509)
chr6 (506-540)||(34915547-34915581)
chr6 (507-540)||(2090658-2090691)
chr6 (507-540)||(10195997-10196030)
chr6 (507-540)||(13866593-13866626)
chr6 (508-571)||(22710267-22710330)
chr6 (507-540)||(28236205-28236238)
chr6 (91-119)||(907778-907806)
chr6 (504-540)||(4844397-4844433)
chr6 (68-116)||(8609491-8609539)
chr6 (507-539)||(17227267-17227299)
chr6 (504-540)||(22999049-22999085)
chr6 (504-540)||(23789319-23789355)
chr6 (504-540)||(34741730-34741766)
[»] chr3 (33 HSPs)
chr3 (24-120)||(32793231-32793327)
chr3 (24-120)||(50833604-50833700)
chr3 (24-120)||(50842153-50842249)
chr3 (68-121)||(50833759-50833812)
chr3 (68-121)||(50833824-50833877)
chr3 (68-121)||(50841976-50842029)
chr3 (68-121)||(50842041-50842094)
chr3 (3-115)||(16980972-16981083)
chr3 (506-574)||(10015759-10015827)
chr3 (506-574)||(46845462-46845530)
chr3 (507-574)||(8321925-8321992)
chr3 (507-574)||(15996743-15996810)
chr3 (503-540)||(28875255-28875292)
chr3 (11-120)||(40166578-40166686)
chr3 (507-574)||(50647914-50647981)
chr3 (68-117)||(50717211-50717259)
chr3 (68-117)||(50795589-50795637)
chr3 (504-573)||(50433360-50433429)
chr3 (506-540)||(4759355-4759389)
chr3 (502-540)||(17589880-17589918)
chr3 (506-540)||(19897840-19897874)
chr3 (506-540)||(24087339-24087373)
chr3 (506-540)||(41392884-41392918)
chr3 (506-540)||(42801520-42801554)
chr3 (506-540)||(49383837-49383871)
chr3 (507-540)||(4759088-4759121)
chr3 (506-539)||(12906418-12906451)
chr3 (507-540)||(45513641-45513674)
chr3 (506-539)||(48904268-48904301)
chr3 (503-540)||(52177796-52177833)
chr3 (504-540)||(20918216-20918252)
chr3 (504-540)||(20927178-20927214)
chr3 (504-539)||(44561679-44561715)
[»] scaffold0246 (1 HSPs)
scaffold0246 (66-116)||(11383-11433)
[»] scaffold0005 (1 HSPs)
scaffold0005 (507-539)||(45672-45704)
[»] scaffold0237 (1 HSPs)
scaffold0237 (506-540)||(6613-6647)
[»] scaffold0163 (1 HSPs)
scaffold0163 (506-540)||(1450-1484)
[»] scaffold0020 (1 HSPs)
scaffold0020 (506-540)||(164213-164247)
[»] scaffold0012 (1 HSPs)
scaffold0012 (502-540)||(47635-47673)
[»] scaffold0674 (1 HSPs)
scaffold0674 (507-540)||(5151-5184)
[»] scaffold0549 (1 HSPs)
scaffold0549 (507-540)||(10186-10219)
[»] scaffold0240 (2 HSPs)
scaffold0240 (507-540)||(18497-18530)
scaffold0240 (507-540)||(18760-18793)
[»] scaffold0161 (1 HSPs)
scaffold0161 (507-540)||(3438-3471)
[»] scaffold0107 (1 HSPs)
scaffold0107 (507-540)||(48654-48687)
[»] scaffold0038 (1 HSPs)
scaffold0038 (507-540)||(36367-36400)
[»] scaffold0122 (1 HSPs)
scaffold0122 (504-540)||(12062-12098)
[»] scaffold0002 (1 HSPs)
scaffold0002 (504-540)||(355335-355371)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 119 - 430
Target Start/End: Complemental strand, 45414841 - 45414532
Alignment:
Q  119 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaagaggaaggaccacaatacatagtaatc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45414841 atacattcgtatgtcacgatgaaagcaccactgctccaaatgacacataatatatgcggtgtatgagttaaaagagaaaggaccacaatacatagtaatc 45414742  T
Q  219 aagaatctaagctggattttgtttgggataacttgagcttctttccctacttattttattttaaacagcagattgcacgcctaattataaaatcaacnnn 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       
T  45414741 aagaatctaagctggattttgtttgggataacttgagcttctttccctacttattttattttaaacagcagattgcacgtctaattataaaatcaacttt 45414642  T
Q  319 nnnnatnnnnnnnnnctagttacttgaaggttagttttataattttcattaaaaatgtttgttaatttgtactcaattactagtttatacctacttaatt 418  Q
         |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45414641 ttt--ttttaaaaaactagttacttgaaggttagttttataattttcattaaaaatgtttgttaatttgtactcaattgctagtttatacctacttaatt 45414544  T
Q  419 ataaatacatta 430  Q
    ||||||||||||    
T  45414543 ataaatacatta 45414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 15930901 - 15931001
Alignment:
Q  19 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 118  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | |||||||||||| ||||| |||||||| |||||||||||||||||| ||||||    
T  15930901 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaaatgtttgcaaacctaataacattaaggaataaggg 15931000  T
Q  119 a 119  Q
    |    
T  15931001 a 15931001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 13067136 - 13067255
Alignment:
Q  1 tggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaat 100  Q
    ||||||||||| ||  ||||||||||||||||| ||||||  ||||||||| |  || |||| | |||||||||||| |||||||| ||||  |||||||    
T  13067136 tggtggaatattgaaagaattttttagggttaatactaacggcaattaatgaaccagttttagagggaaatttttagggttaagtgattgctaacctaat 13067235  T
Q  101 aacattaaggagtaagggat 120  Q
    ||||||||||||||||||||    
T  13067236 aacattaaggagtaagggat 13067255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 40915477 - 40915574
Alignment:
Q  24 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||| ||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  40915477 ttagggttaacactaacaacaattaatacaacattttgagagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 40915574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 503 - 574
Target Start/End: Original strand, 31751065 - 31751136
Alignment:
Q  503 attatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  31751065 attatactacctccgtccctaattataagacccttttgtgaaatttttttgtccctttttataagacccctt 31751136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 12890246 - 12890178
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  12890246 atactacctccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagacccctt 12890178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 4814654 - 4814602
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  4814654 aaatctttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 4814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 8912911 - 8912844
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  8912911 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 8912844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 8782463 - 8782499
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8782463 ttatactacctccgtctctaattataagaaccttttg 8782499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 539
Target Start/End: Original strand, 12872986 - 12873018
Alignment:
Q  507 tactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||||||||||||||||||||||    
T  12872986 tactacctccgtctctaattataagaccctttt 12873018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 540
Target Start/End: Original strand, 41422510 - 41422545
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41422510 tatactacctccgtccctaattataagacccttttg 41422545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 539
Target Start/End: Original strand, 2199976 - 2200010
Alignment:
Q  505 tatactacctccgtctctaattataagaccctttt 539  Q
    ||||||||||||||| |||||||||||||||||||    
T  2199976 tatactacctccgtccctaattataagaccctttt 2200010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 12360456 - 12360490
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| |||||||||||||||||||    
T  12360456 atactacctccgtctttaattataagacccttttg 12360490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 539
Target Start/End: Original strand, 23083513 - 23083547
Alignment:
Q  505 tatactacctccgtctctaattataagaccctttt 539  Q
    ||||||||||||||| |||||||||||||||||||    
T  23083513 tatactacctccgtccctaattataagaccctttt 23083547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 26322331 - 26322297
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  26322331 atactacctccgtccctaattataagacccttttg 26322297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 540
Target Start/End: Complemental strand, 34062707 - 34062669
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  34062707 aattatactccctccgtccctaattataagacccttttg 34062669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 39833734 - 39833772
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  39833734 aattatactccctccgtccctaattataagacccttttg 39833772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 41494660 - 41494626
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  41494660 atactacctccgtccctaattataagacccttttg 41494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 2060316 - 2060349
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  2060316 tactacctccgtccctaattataagacccttttg 2060349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 2200277 - 2200244
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  2200277 tactacctccgtccctaattataagacccttttg 2200244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 3095299 - 3095332
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  3095299 tactacctccgtccctaattataagacccttttg 3095332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 7116336 - 7116303
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  7116336 tactacctccgtccctaattataagacccttttg 7116303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 9059899 - 9059951
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    |||||||||| |||||||  ||||| ||||||||| ||||||||||||||||||    
T  9059899 aaatttttagggttaagttgttgca-acctaataagattaaggagtaagggata 9059951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 18374741 - 18374708
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  18374741 tactacctccgtccctaattataagacccttttg 18374708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 24345715 - 24345682
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  24345715 tactacctccgtccctaattataagacccttttg 24345682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 28566151 - 28566184
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  28566151 tactacctccgtccctaattataagacccttttg 28566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 32712825 - 32712792
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||||||||||||| |||||    
T  32712825 tactacctccgtctctaattataagacctttttg 32712792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 3904455 - 3904491
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  3904455 ttatactacctccgtctttaattataatacccttttg 3904491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 6027615 - 6027651
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| |||||||||||| |||||||    
T  6027615 ttatactacctccgtccctaattataagatccttttg 6027651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 539
Target Start/End: Complemental strand, 13215857 - 13215825
Alignment:
Q  507 tactacctccgtctctaattataagaccctttt 539  Q
    ||||||||||||| |||||||||||||||||||    
T  13215857 tactacctccgtccctaattataagaccctttt 13215825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 16108212 - 16108248
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  16108212 ttatactccctccgtccctaattataagacccttttg 16108248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 9e-50; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 42998618 - 42998738
Alignment:
Q  1 tggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaat 100  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||    
T  42998618 tggtggaatatggagggaagtttttagggttaacactaacaacaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaat 42998717  T
Q  101 aacattaaggagtaagggata 121  Q
    |||||||||||||||||||||    
T  42998718 aacattaaggagtaagggata 42998738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 42999211 - 42999331
Alignment:
Q  1 tggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaat 100  Q
    ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||    
T  42999211 tggtggaatatggagggaagtttttagggttaacactaacagcaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaat 42999310  T
Q  101 aacattaaggagtaagggata 121  Q
    |||||||||||||||||||||    
T  42999311 aacattaaggagtaagggata 42999331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 50232993 - 50233090
Alignment:
Q  24 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    ||||||||||||||||||||||||||| ||  |  || |    ||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  50232993 ttagggttaacactaacaacaattaatacaacattttgagcgagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggata 50233090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 505 - 574
Target Start/End: Complemental strand, 41191667 - 41191598
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  41191667 tatactacctccgtctctaattataagacccttttgagaaaaaaatttgtccctttttataagacccctt 41191598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 43605582 - 43605691
Alignment:
Q  11 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 110  Q
    ||||||||| ||||||||| || |||| | | |||||||||||  |||||| ||   |||||||||| ||||| |||||||| |||||||||||||||||    
T  43605582 tagagggaaatttttagggcta-cacttagagcaattaatgcagcagatttgaagccaaatttttagggttaattgtttgcaaacctaataacattaagg 43605680  T
Q  111 agtaagggata 121  Q
    || ||| ||||    
T  43605681 aggaagagata 43605691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 507 - 574
Target Start/End: Original strand, 17339078 - 17339145
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  17339078 tactacctccgtctctaattataagacccttttgagaattttttttgtccctttttataagacccctt 17339145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 574
Target Start/End: Original strand, 4415962 - 4416032
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  4415962 ttatactacctccgtccctaattataagacccttttgagaatgttttttgtccctttttataagacccctt 4416032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 49228758 - 49228688
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||| |||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  49228758 ttatactccctccgtctctaattataagacccttttgaagaaaaaatttgtccctttttataagacccctt 49228688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 574
Target Start/End: Original strand, 51335788 - 51335860
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||||| ||| |||||||||||||||||||          ||||||||||||||||||||||||    
T  51335788 aattatactacctccatctttaattataagacccttttgagaaatttttttgtccctttttataagacccctt 51335860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 29520201 - 29520134
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  29520201 tactacctccgtccctaattataagacccttttgagaaaaaaatttgtccctttttataagacccctt 29520134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Original strand, 36990914 - 36990981
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||||||||||||||||| |||||          ||||||||||||||||||||||||    
T  36990914 tactacctccgtctctaattataagacctttttgagaattttttttgtccctttttataagacccctt 36990981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 539
Target Start/End: Complemental strand, 14794059 - 14794027
Alignment:
Q  507 tactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||||||||||||||||||||||    
T  14794059 tactacctccgtctctaattataagaccctttt 14794027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 46949989 - 46950025
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| ||||||||||||||||||||    
T  46949989 ttatactacctccgtccctaattataagacccttttg 46950025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 540
Target Start/End: Original strand, 18872715 - 18872750
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| ||||||||||||||||||||    
T  18872715 tatactacctccgtccctaattataagacccttttg 18872750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 540
Target Start/End: Complemental strand, 20455220 - 20455185
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20455220 tatactacctccgtccctaattataagacccttttg 20455185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 571
Target Start/End: Complemental strand, 28501424 - 28501359
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagaccc 571  Q
    |||||||||||||| ||||||||||||||||||||          |||||||||||||||||||||    
T  28501424 atactacctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagaccc 28501359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 540
Target Start/End: Complemental strand, 32899257 - 32899222
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32899257 tatactacctccgtccctaattataagacccttttg 32899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 539
Target Start/End: Original strand, 21265218 - 21265252
Alignment:
Q  505 tatactacctccgtctctaattataagaccctttt 539  Q
    ||||||||||||||| |||||||||||||||||||    
T  21265218 tatactacctccgtccctaattataagaccctttt 21265252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 539
Target Start/End: Original strand, 30523762 - 30523796
Alignment:
Q  505 tatactacctccgtctctaattataagaccctttt 539  Q
    ||||||||||||||| |||||||||||||||||||    
T  30523762 tatactacctccgtccctaattataagaccctttt 30523796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 49793090 - 49793124
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  49793090 atactacctccgtccctaattataagacccttttg 49793124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 52870643 - 52870677
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    ||||| |||||||||||||||||||||||||||||    
T  52870643 atactccctccgtctctaattataagacccttttg 52870677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 56432517 - 56432551
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  56432517 atactacctccgtccctaattataagacccttttg 56432551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 7698506 - 7698473
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  7698506 tactacctccgtccctaattataagacccttttg 7698473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 25124283 - 25124250
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  25124283 tactacctccgtccctaattataagacccttttg 25124250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 31937076 - 31937109
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  31937076 tactacctccgtccctaattataagacccttttg 31937109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 39671023 - 39670990
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  39671023 tactacctccgtccctaattataagacccttttg 39670990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 49373730 - 49373697
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  49373730 tactacctccgtccctaattataagacccttttg 49373697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 53564393 - 53564360
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  53564393 tactacctccgtccctaattataagacccttttg 53564360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 55563164 - 55563131
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  55563164 tactacctccgtccctaattataagacccttttg 55563131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 3085442 - 3085478
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| |||||||||||| |||||||    
T  3085442 ttatactacctccgtccctaattataagatccttttg 3085478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 540
Target Start/End: Complemental strand, 9328288 - 9328244
Alignment:
Q  496 tcatacaattatactacctccgtctctaattataagacccttttg 540  Q
    ||||| |||| |||| |||||||| ||||||||||||||||||||    
T  9328288 tcataaaattgtactccctccgtccctaattataagacccttttg 9328244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 538
Target Start/End: Original strand, 29508597 - 29508629
Alignment:
Q  506 atactacctccgtctctaattataagacccttt 538  Q
    |||||||||||||| ||||||||||||||||||    
T  29508597 atactacctccgtccctaattataagacccttt 29508629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 540
Target Start/End: Complemental strand, 50424886 - 50424858
Alignment:
Q  512 cctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||||||||||||||    
T  50424886 cctccgtctctaattataagacccttttg 50424858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 29632579 - 29632694
Alignment:
Q  6 gaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacat 105  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||| ||||||||||||    
T  29632579 gaatttagaggaaattttttagggtcaacactaacaacaattaatgcattagatttagagggaaatttttagggttaagtgtttgcaaacctaataacat 29632678  T
Q  106 taaggagtaagggata 121  Q
    ||||||||||||||||    
T  29632679 taaggagtaagggata 29632694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 21654666 - 21654547
Alignment:
Q  1 tggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaat 100  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||| | |||||  | ||| ||| |||||||||| |||||||    
T  21654666 tggtggaatatggagggaagtttttagggttaacactaacaataattaatgcatcagatttagagggaaaaatgtagggtttagtgtttgcacacctaat 21654567  T
Q  101 aacattaaggagtaagggat 120  Q
    ||||||||||||||||||||    
T  21654566 aacattaaggagtaagggat 21654547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 21012013 - 21012109
Alignment:
Q  24 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 120  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  21012013 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 21012109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 505 - 574
Target Start/End: Original strand, 7940450 - 7940519
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  7940450 tatactacctccgtccctaattataagacccttttgaaaaaaaaaattgtccctttttataagacccctt 7940519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 20142297 - 20142229
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  20142297 atactacctccgtccctaattataagacccttttggaaaaaaaaattgtccctttttataagacccctt 20142229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 540
Target Start/End: Complemental strand, 38372017 - 38371979
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  38372017 aattatactacatccgtctctaattataagacccttttg 38371979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 23286511 - 23286444
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  23286511 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 23286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 3028010 - 3028046
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| ||||||||||||||||||||    
T  3028010 ttatactacctccgtccctaattataagacccttttg 3028046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 23260178 - 23260142
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| ||||||||||||||||||||    
T  23260178 ttatactacctccgtccctaattataagacccttttg 23260142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 7734832 - 7734866
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||||||||||||||| |||||||    
T  7734832 atactacctccgtctctaattataagatccttttg 7734866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 8949811 - 8949845
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  8949811 atactacctccgtccctaattataagacccttttg 8949845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 14435829 - 14435863
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  14435829 atactacctccgtccctaattataagacccttttg 14435863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 14913643 - 14913681
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  14913643 aattatactccctccgtccctaattataagacccttttg 14913681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 32147589 - 32147555
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    ||||| |||||||||||||||||||||||||||||    
T  32147589 atactccctccgtctctaattataagacccttttg 32147555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 571
Target Start/End: Complemental strand, 43060448 - 43060384
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagaccc 571  Q
    ||||||||||||| ||||||||||||||||||||          |||||||||||||||||||||    
T  43060448 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagaccc 43060384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 4976327 - 4976294
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  4976327 tactacctccgtccctaattataagacccttttg 4976294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 10641659 - 10641700
Alignment:
Q  11 tagagggaattttttagggttaacactaacaacaattaatgc 52  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  10641659 tagagggaattttctagggttatcactaacaacatttaatgc 10641700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 19571976 - 19571943
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  19571976 tactacctccgtccctaattataagacccttttg 19571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 23092677 - 23092644
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||| |||||||||||||||    
T  23092677 tactacctccgtctctaactataagacccttttg 23092644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 540
Target Start/End: Complemental strand, 26894914 - 26894877
Alignment:
Q  503 attatactacctccgtctctaattataagacccttttg 540  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  26894914 attatactccctccgtccctaattataagacccttttg 26894877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 6673268 - 6673232
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  6673268 ttatactccctccgtccctaattataagacccttttg 6673232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 13759487 - 13759451
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||  ||||||||||||||||||||    
T  13759487 ttatactacctccgttcctaattataagacccttttg 13759451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 15520730 - 15520766
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  15520730 ttatactacatccgtctctaattataagactcttttg 15520766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 16440927 - 16440963
Alignment:
Q  503 attatactacctccgtctctaattataagaccctttt 539  Q
    |||||||| |||||||| |||||||||||||||||||    
T  16440927 attatactccctccgtccctaattataagaccctttt 16440963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 22657765 - 22657801
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| |||||||||||| |||||||    
T  22657765 ttatactacctccgtccctaattataagatccttttg 22657801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 533
Target Start/End: Complemental strand, 30183140 - 30183112
Alignment:
Q  505 tatactacctccgtctctaattataagac 533  Q
    |||||||||||||||||||||||||||||    
T  30183140 tatactacctccgtctctaattataagac 30183112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 39971011 - 39971047
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  39971011 ttatactacctccgtccctaattataagactcttttg 39971047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 5242660 - 5242766
Alignment:
Q  11 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 110  Q
    ||||||||||||||||||| || || |||||||||||||||||  ||||||| | |||||||||||| |||||||||||||| |||||||||||||||||    
T  5242660 tagagggaattttttagggcta-caataacaacaattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaagg 5242758  T
Q  111 agtaaggg 118  Q
    ||||||||    
T  5242759 agtaaggg 5242766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 574
Target Start/End: Original strand, 23487059 - 23487131
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  23487059 aattatactacctccgtccctaattataagacccttttgaaaaaaaaaattgtccctttttataagacccctt 23487131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 505 - 574
Target Start/End: Complemental strand, 18112014 - 18111945
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  18112014 tatactacctccgtccctaattataagacccttttggaaaaaaaaattgtccctttttataagacccctt 18111945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Original strand, 5162304 - 5162371
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  5162304 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 5162371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 32522880 - 32522813
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  32522880 tactacctccgtcgctaattataagacccttttgaaaaaaaaaattgtccctttttataagacccctt 32522813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 12802608 - 12802644
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| ||||||||||||||||||||    
T  12802608 ttatactacctccgtccctaattataagacccttttg 12802644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 540
Target Start/End: Complemental strand, 2152279 - 2152244
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2152279 tatactacctccgtccctaattataagacccttttg 2152244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 23688203 - 23688169
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  23688203 atactacctccgtccctaattataagacccttttg 23688169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 29598223 - 29598257
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    ||||| |||||||||||||||||||||||||||||    
T  29598223 atactccctccgtctctaattataagacccttttg 29598257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 6050592 - 6050559
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  6050592 tactacctccgtccctaattataagacccttttg 6050559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 17069881 - 17069848
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  17069881 tactacctccgtccctaattataagacccttttg 17069848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 17578392 - 17578425
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  17578392 tactacctccgtccctaattataagacccttttg 17578425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 18641417 - 18641384
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  18641417 tactacctccgtccctaattataagacccttttg 18641384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 571
Target Start/End: Original strand, 18754141 - 18754208
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagaccc 571  Q
    ||||||| |||||||| ||||||||||||||||||||          |||||||||||||||||||||    
T  18754141 ttatactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagaccc 18754208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 30140122 - 30140155
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| |||||||||||||||||||    
T  30140122 tactacctccgtctataattataagacccttttg 30140155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 540
Target Start/End: Complemental strand, 38781182 - 38781145
Alignment:
Q  503 attatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||  |||||||||||||||||||    
T  38781182 attatactacctccgtccataattataagacccttttg 38781145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 38878721 - 38878754
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    |||| |||||||||||||||||||||||||||||    
T  38878721 tactccctccgtctctaattataagacccttttg 38878754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Original strand, 44580615 - 44580648
Alignment:
Q  506 atactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||| |||||||||||||||||||    
T  44580615 atactacctccgtccctaattataagaccctttt 44580648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 44888680 - 44888713
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  44888680 tactacctccgtccctaattataagacccttttg 44888713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 45283829 - 45283796
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  45283829 tactacctccgtccctaattataagacccttttg 45283796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 26016566 - 26016602
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  26016566 ttatactccctccgtccctaattataagacccttttg 26016602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 40530446 - 40530410
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  40530446 ttatactccctccgtccctaattataagacccttttg 40530410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 4670 - 4569
Alignment:
Q  19 attttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaaggg 118  Q
    |||||||||||||| |||||| ||||||||||||||  | |||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  4670 attttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagagttaagtgtttgcaaacctaataacattaaggaataaggg 4571  T
Q  119 at 120  Q
    ||    
T  4570 at 4569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 39180073 - 39179965
Alignment:
Q  11 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 110  Q
    |||||||||||||||||||||| ||| ||||||| |||||||| |||||||| | ||||||| |||| ||| |||| ||||| |||||||||||||||||    
T  39180073 tagagggaattttttagggttatcaccaacaacatttaatgcaaaagatttagagggaaattattagggtttagtggttgcaaacctaataacattaagg 39179974  T
Q  111 agtaaggga 119  Q
    |||||||||    
T  39179973 agtaaggga 39179965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 48538675 - 48538558
Alignment:
Q  1 tggtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaat 100  Q
    ||||||||||| ||  ||||||||||||||||||||||||  ||||||||| |  || |||| | |||||||||||| |||||||| ||||  |||||||    
T  48538675 tggtggaatattgaaagaattttttagggttaacactaacggcaattaatgaaacagttttagagggaaatttttagggttaagtgattgctaacctaat 48538576  T
Q  101 aacattaaggagtaaggg 118  Q
    ||||||||||||||||||    
T  48538575 aacattaaggagtaaggg 48538558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 24535404 - 24535501
Alignment:
Q  24 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||| | |||||||| ||||  ||||||||||||||||||||||||||||    
T  24535404 ttagggttaacactaacaacaattaatacaacattttgagagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagggata 24535501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 6089734 - 6089802
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  6089734 atactacctccgtctctaattataagacccttttgaaaaaaaaaattgtccctttttataagacccctt 6089802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 48067932 - 48067865
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  48067932 tactacctccgtctctaattataagacccttttgaaaaaaaaatttgtccctttttataagacccctt 48067865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 9413365 - 9413295
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  9413365 ttatactacctccgtccctaattataagacccttttgaaaaaaaaaattgtccctttttataagacccctt 9413295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 25509204 - 25509242
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25509204 aattatactacctccgtccctaattataagacccttttg 25509242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 21631144 - 21631077
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  21631144 tactacctccgtccctaattataagacccttttgaagaaacaaattgtccctttttataagacccctt 21631077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 539
Target Start/End: Complemental strand, 47296582 - 47296550
Alignment:
Q  507 tactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||||||||||||||||||||||    
T  47296582 tactacctccgtctctaattataagaccctttt 47296550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 52431214 - 52431144
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||| |||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  52431214 ttatactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 52431144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 571
Target Start/End: Original strand, 27037268 - 27037333
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagaccc 571  Q
    |||||||||||||| ||||||||||||||||||||          |||||||||||||||||||||    
T  27037268 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagaccc 27037333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 540
Target Start/End: Original strand, 28885840 - 28885875
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28885840 tatactacctccgtccctaattataagacccttttg 28885875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 5766028 - 5765994
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  5766028 atactacctccgtccctaattataagacccttttg 5765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 7763787 - 7763753
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  7763787 atactacctccgtccctaattataagacccttttg 7763753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 17483732 - 17483766
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  17483732 atactacctccgtccctaattataagacccttttg 17483766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 22940560 - 22940594
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||||||||| ||||||||||    
T  22940560 atactacctccgtctctaattataggacccttttg 22940594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 42276199 - 42276165
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  42276199 atactacctccgtccctaattataagacccttttg 42276165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 3549032 - 3549065
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||||||||||| |||||||    
T  3549032 tactacctccgtctctaattataagatccttttg 3549065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 4280163 - 4280130
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  4280163 tactacctccgtccctaattataagacccttttg 4280130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Original strand, 4389607 - 4389640
Alignment:
Q  506 atactacctccgtctctaattataagaccctttt 539  Q
    ||||||||||||||||||||||||||||| ||||    
T  4389607 atactacctccgtctctaattataagaccttttt 4389640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 11907268 - 11907235
Alignment:
Q  506 atactacctccgtctctaattataagaccctttt 539  Q
    ||||| ||||||||||||||||||||||||||||    
T  11907268 atacttcctccgtctctaattataagaccctttt 11907235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 14171542 - 14171575
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    |||| |||||||||||||||||||||||||||||    
T  14171542 tactccctccgtctctaattataagacccttttg 14171575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 25227304 - 25227337
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  25227304 tactacctccgtccctaattataagacccttttg 25227337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 27037567 - 27037534
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  27037567 tactacctccgtccctaattataagacccttttg 27037534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 33244950 - 33244917
Alignment:
Q  503 attatactacctccgtctctaattataagaccct 536  Q
    |||||||||||||||||||||| |||||||||||    
T  33244950 attatactacctccgtctctaagtataagaccct 33244917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 536
Target Start/End: Complemental strand, 33265123 - 33265090
Alignment:
Q  503 attatactacctccgtctctaattataagaccct 536  Q
    |||||||||||||||||||||| |||||||||||    
T  33265123 attatactacctccgtctctaagtataagaccct 33265090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 38613773 - 38613740
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  38613773 tactacctccgtccctaattataagacccttttg 38613740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 41317593 - 41317626
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  41317593 tactacctccgtccctaattataagacccttttg 41317626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 43456658 - 43456625
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  43456658 tactacctccgtccctaattataagacccttttg 43456625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 39362931 - 39362967
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  39362931 ttatactccctccgtccctaattataagacccttttg 39362967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 39750118 - 39750154
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  39750118 ttatactccctccgtccctaattataagacccttttg 39750154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 41317893 - 41317857
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||||||||||| | ||||||||    
T  41317893 ttatactacctccgtctctaattatagggcccttttg 41317857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 18478739 - 18478629
Alignment:
Q  11 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 110  Q
    ||||||||||||| |||||||| ||| ||||||| ||||||||  ||||||| | ||||||| |||| ||| |||  ||||| |||||||||||||||||    
T  18478739 tagagggaattttctagggttatcaccaacaacatttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaagg 18478640  T
Q  111 agtaagggata 121  Q
    |||||||||||    
T  18478639 agtaagggata 18478629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 18418404 - 18418494
Alignment:
Q  31 taacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    |||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||| |||||||||||||||||||||    
T  18418404 taacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagggata 18418494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 23485532 - 23485479
Alignment:
Q  67 gaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  23485532 gaaatttttagggttaagtgtttgca-acctaataaaattaaggagtaagggata 23485479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 503 - 574
Target Start/End: Original strand, 38858294 - 38858365
Alignment:
Q  503 attatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||| |||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  38858294 attatactccctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 38858365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 49045157 - 49045124
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||||||||||||||||||||||    
T  49045157 tactacctccgtctctaattataagacccttttg 49045124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 2290056 - 2290020
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2290056 ttatactacctccgtccctaattataagacccttttg 2290020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 29176989 - 29177025
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||||||||||||||||||||||||    
T  29176989 ttatactccctccgtctctaattataagacccttttg 29177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 540
Target Start/End: Original strand, 27813494 - 27813529
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| ||||||||||||||||||||    
T  27813494 tatactacctccgtccctaattataagacccttttg 27813529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 574
Target Start/End: Original strand, 33682712 - 33682781
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||||| ||||||||||||||||||           ||||||||||||||||||||||||    
T  33682712 tatactacctccgtctataattataagacccttttaaaaaaataatttgtccctttttataagacccctt 33682781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 539
Target Start/End: Original strand, 1574713 - 1574751
Alignment:
Q  501 caattatactacctccgtctctaattataagaccctttt 539  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  1574713 caatgatactacctccgtccctaattataagaccctttt 1574751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 33381611 - 33381577
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  33381611 atactacctccgtccctaattataagacccttttg 33381577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 34012555 - 34012521
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  34012555 atactacctccgtccctaattataagacccttttg 34012521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 41444201 - 41444235
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    ||||||||| |||||||||||||||||||||||||    
T  41444201 atactaccttcgtctctaattataagacccttttg 41444235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 18113203 - 18113170
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    |||| |||||||||||||||||||||||||||||    
T  18113203 tactccctccgtctctaattataagacccttttg 18113170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 31581677 - 31581710
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  31581677 tactacctccgtccctaattataagacccttttg 31581710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 32118200 - 32118167
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  32118200 tactacctccgtccctaattataagacccttttg 32118167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 42541897 - 42541864
Alignment:
Q  506 atactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||| |||||||||||||||||||    
T  42541897 atactacctccgtccctaattataagaccctttt 42541864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 534
Target Start/End: Complemental strand, 6799588 - 6799556
Alignment:
Q  502 aattatactacctccgtctctaattataagacc 534  Q
    |||||||||||||||||| ||||||||||||||    
T  6799588 aattatactacctccgtccctaattataagacc 6799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 20075147 - 20075111
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  20075147 ttatactccctccgtccctaattataagacccttttg 20075111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 7015574 - 7015463
Alignment:
Q  11 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 110  Q
    |||||| ||||||||||| ||| ||||||||||| ||||| ||  ||||||| | ||||||  |||| ||| |||| ||||| |||||||||||||||||    
T  7015574 tagaggaaattttttaggattatcactaacaacatttaatacaatagatttagagggaaataattagggtttagtggttgcaaacctaataacattaagg 7015475  T
Q  111 agtaagggatac 122  Q
    ||||||||||||    
T  7015474 agtaagggatac 7015463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 5169780 - 5169674
Alignment:
Q  11 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 110  Q
    |||||| |||||| |||||||| |||| |||||  ||||||||  ||||||| | ||||||| |||| ||| |||| ||||| ||||||||| |||||||    
T  5169780 tagaggaaattttctagggttatcactgacaacgtttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaagg 5169681  T
Q  111 agtaagg 117  Q
    |||||||    
T  5169680 agtaagg 5169674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 402661 - 402591
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  402661 ttatactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 402591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 13321364 - 13321296
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  13321364 atactacctccgtccctaattataagacccttttgaaaaaataatttgtccctttttataagacccctt 13321296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 25045681 - 25045613
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  25045681 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 25045613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 540
Target Start/End: Original strand, 23604458 - 23604493
Alignment:
Q  505 tatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23604458 tatactacctccgtccctaattataagacccttttg 23604493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 4175241 - 4175275
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||||||||||||||||||||||    
T  4175241 atactacatccgtctctaattataagacccttttg 4175275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 13901640 - 13901674
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  13901640 atactacctccgtccctaattataagacccttttg 13901674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 15498628 - 15498662
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  15498628 atactacctccgtccctaattataagacccttttg 15498662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 16122552 - 16122518
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  16122552 atactacctccgtccctaattataagacccttttg 16122518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 19097839 - 19097805
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    ||||| |||||||||||||||||||||||||||||    
T  19097839 atactccctccgtctctaattataagacccttttg 19097805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 571
Target Start/End: Original strand, 31091445 - 31091509
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagaccc 571  Q
    ||||||||||||| ||||||||||||||||||||          |||||||||||||||||||||    
T  31091445 tactacctccgtccctaattataagacccttttgaaaaaaaaaattgtccctttttataagaccc 31091509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 34915581 - 34915547
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  34915581 atactacctccgtccctaattataagacccttttg 34915547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 2090658 - 2090691
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  2090658 tactacctccgtccctaattataagacccttttg 2090691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 10196030 - 10195997
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    |||| |||||||||||||||||||||||||||||    
T  10196030 tactccctccgtctctaattataagacccttttg 10195997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 13866593 - 13866626
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  13866593 tactacctccgtccctaattataagacccttttg 13866626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 571
Target Start/End: Original strand, 22710267 - 22710330
Alignment:
Q  508 actacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagaccc 571  Q
    |||||||||||||||||||||||||| ||||||          |||||||||||||||||||||    
T  22710267 actacctccgtctctaattataagacacttttgaaaaaataatttgtccctttttataagaccc 22710330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 28236238 - 28236205
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||||||||||||||| ||||||    
T  28236238 tactacctccgtctctaattataagacacttttg 28236205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 907778 - 907806
Alignment:
Q  91 cagacctaataacattaaggagtaaggga 119  Q
    |||||||||||||||||||||||||||||    
T  907778 cagacctaataacattaaggagtaaggga 907806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 4844397 - 4844433
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  4844397 ttatactccctccgtccctaattataagacccttttg 4844433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 8609491 - 8609539
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 116  Q
    |||||| ||| ||||| ||| |||||||||||||| |||||||||||||    
T  8609491 aaatttctagggttaattgtatgcagacctaataagattaaggagtaag 8609539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 539
Target Start/End: Original strand, 17227267 - 17227299
Alignment:
Q  507 tactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||| ||||||||||||||||||    
T  17227267 tactacctccgtctttaattataagaccctttt 17227299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 22999085 - 22999049
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  22999085 ttatactacctccgtccctagttataagacccttttg 22999049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 23789319 - 23789355
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  23789319 ttatactacctccgtccctagttataagacccttttg 23789355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 34741766 - 34741730
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  34741766 ttatactccctccgtccctaattataagacccttttg 34741730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 32793231 - 32793327
Alignment:
Q  24 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 120  Q
    ||||||||||||||||||||||||||| ||  |  || | | |||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  32793231 ttagggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 32793327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 50833604 - 50833700
Alignment:
Q  24 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 120  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50833604 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50833700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 50842249 - 50842153
Alignment:
Q  24 ttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggat 120  Q
    ||||||||||||||||||||||||||| ||  |  || | |  ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  50842249 ttagggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagggat 50842153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 50833812 - 50833759
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833812 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50833759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 50833877 - 50833824
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50833877 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50833824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 50841976 - 50842029
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50841976 aaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagggata 50842029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 50842041 - 50842094
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagggata 121  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50842041 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagggata 50842094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 16981083 - 16980972
Alignment:
Q  3 gtggaatatagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataa 102  Q
    |||||||| |||| |||||||| ||||||||||||||||  | ||||||||| ||||||| |   || ||||||| ||||||   ||||| |||||||||    
T  16981083 gtggaatagagagagaattttt-agggttaacactaacagaagttaatgcatgagatttagagaaaattttttagggttaagcaattgcaaacctaataa 16980985  T
Q  103 cattaaggagtaa 115  Q
    |||||||||||||    
T  16980984 cattaaggagtaa 16980972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 10015827 - 10015759
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  10015827 atactacctccgtccctaattataagacccttttgaaaaaaaaaattgtccctttttataagacccctt 10015759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 574
Target Start/End: Complemental strand, 46845530 - 46845462
Alignment:
Q  506 atactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  46845530 atactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 46845462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Original strand, 8321925 - 8321992
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  8321925 tactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagacccctt 8321992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 15996810 - 15996743
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    ||||||||||||| ||||||||||||||||||||          ||||||||||||||||||||||||    
T  15996810 tactacctccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagacccctt 15996743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 503 - 540
Target Start/End: Complemental strand, 28875292 - 28875255
Alignment:
Q  503 attatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  28875292 attatactacctccgtccctaattataagacccttttg 28875255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 40166578 - 40166686
Alignment:
Q  11 tagagggaattttttagggttaacactaacaacaattaatgcataagatttaaaaggaaatttttagagttaagtgtttgcagacctaataacattaagg 110  Q
    ||||||||| ||||||||| || || | |||||||||||||||  ||||||  |   |||||| ||| ||| | | ||||||||| ||||||||||||||    
T  40166578 tagagggaaatttttagggcta-caattacaacaattaatgcagcagatttggagccaaatttctagggttgattatttgcagacttaataacattaagg 40166676  T
Q  111 agtaagggat 120  Q
    ||||||||||    
T  40166677 agtaagggat 40166686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 50647981 - 50647914
Alignment:
Q  507 tactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccctt 574  Q
    |||| |||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  50647981 tactccctccgtctctaattataagacccttttgagaaaaaattttgtccctttttataagacccctt 50647914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 50717259 - 50717211
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 117  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50717259 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50717211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 50795589 - 50795637
Alignment:
Q  68 aaatttttagagttaagtgtttgcagacctaataacattaaggagtaagg 117  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||    
T  50795589 aaatctttagagttaagtgtttgca-acctaataaaattaaggagtaagg 50795637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 573
Target Start/End: Complemental strand, 50433429 - 50433360
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttgnnnnnnnnnnttgtccctttttataagacccct 573  Q
    |||||||||||||||| ||||||||||||||||| ||          |||||||||||||||||||||||    
T  50433429 ttatactacctccgtccctaattataagacccttgtgagaattttttttgtccctttttataagacccct 50433360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 4759389 - 4759355
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  4759389 atactacctccgtccctaattataagacccttttg 4759355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 540
Target Start/End: Complemental strand, 17589918 - 17589880
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  17589918 aattatactacctccgtccctaattataagacacttttg 17589880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 19897874 - 19897840
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  19897874 atactacctccgtccctaattataagacccttttg 19897840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 24087373 - 24087339
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  24087373 atactacctccgtccctaattataagacccttttg 24087339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 41392918 - 41392884
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  41392918 atactacctccgtccctaattataagacccttttg 41392884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 42801520 - 42801554
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  42801520 atactacctccgtccctaattataagacccttttg 42801554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 49383871 - 49383837
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||||||||||||||||| ||||||    
T  49383871 atactacctccgtctctaattataagactcttttg 49383837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 4759088 - 4759121
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  4759088 tactacctccgtccctaattataagacccttttg 4759121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 12906451 - 12906418
Alignment:
Q  506 atactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||| |||||||||||||||||||    
T  12906451 atactacctccgtccctaattataagaccctttt 12906418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 45513674 - 45513641
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  45513674 tactacctccgtccctaattataagacccttttg 45513641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 539
Target Start/End: Complemental strand, 48904301 - 48904268
Alignment:
Q  506 atactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||| |||||||||||||||||||    
T  48904301 atactacctccgtccctaattataagaccctttt 48904268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 540
Target Start/End: Original strand, 52177796 - 52177833
Alignment:
Q  503 attatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  52177796 attatactacctccgtccctaattataggacccttttg 52177833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 20918216 - 20918252
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  20918216 ttatgctacctccgtccctaattataagacccttttg 20918252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 20927178 - 20927214
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  20927178 ttatgctacctccgtccctaattataagacccttttg 20927214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 539
Target Start/End: Complemental strand, 44561715 - 44561679
Alignment:
Q  504 ttatactacctccgtctct-aattataagaccctttt 539  Q
    ||||||||||||||||||| |||||||||||||||||    
T  44561715 ttatactacctccgtctctaaattataagaccctttt 44561679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 11433 - 11383
Alignment:
Q  66 ggaaatttttagagttaagtgtttgcagacctaataacattaaggagtaag 116  Q
    |||||||||||  |||||||||||| | |||||||||||||||||||||||    
T  11433 ggaaatttttaaggttaagtgtttgaaaacctaataacattaaggagtaag 11383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 539
Target Start/End: Original strand, 45672 - 45704
Alignment:
Q  507 tactacctccgtctctaattataagaccctttt 539  Q
    |||||||||||||||||||||||||||||||||    
T  45672 tactacctccgtctctaattataagaccctttt 45704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 6647 - 6613
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  6647 atactacctccgtccctaattataagacccttttg 6613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Complemental strand, 1484 - 1450
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  1484 atactacctccgtccctaattataagacccttttg 1450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 540
Target Start/End: Original strand, 164213 - 164247
Alignment:
Q  506 atactacctccgtctctaattataagacccttttg 540  Q
    |||||||||||||| ||||||||||||||||||||    
T  164213 atactacctccgtccctaattataagacccttttg 164247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 47635 - 47673
Alignment:
Q  502 aattatactacctccgtctctaattataagacccttttg 540  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  47635 aattatactccctccgtccctaattataagacccttttg 47673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 5151 - 5184
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  5151 tactacctccgtccctaattataagacccttttg 5184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 10219 - 10186
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  10219 tactacctccgtccctaattataagacccttttg 10186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 18497 - 18530
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  18497 tactacctccgtccctaattataagacccttttg 18530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 18793 - 18760
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  18793 tactacctccgtccctaattataagacccttttg 18760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 3438 - 3471
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  3438 tactacctccgtccctaattataagacccttttg 3471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 48654 - 48687
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||| ||||||||||||||||||||    
T  48654 tactacctccgtccctaattataagacccttttg 48687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 36400 - 36367
Alignment:
Q  507 tactacctccgtctctaattataagacccttttg 540  Q
    ||||||||||||||||||||||||||| ||||||    
T  36400 tactacctccgtctctaattataagacacttttg 36367  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 12062 - 12098
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  12062 ttatactccctccgtccctaattataagacccttttg 12098  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 355371 - 355335
Alignment:
Q  504 ttatactacctccgtctctaattataagacccttttg 540  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  355371 ttatactccctccgtccctaattataagacccttttg 355335  T

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