View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_53 (Length: 237)
Name: NF2705_low_53
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 42998575 - 42998429
Alignment:
| Q |
1 |
ataacgtgctattttgttaaattttttatataatgaatcgcattaaatttcaactcttgatatgccgcatggaaaacagaaagctctccactcagaannn |
100 |
Q |
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| T |
42998575 |
ataacgtgccattttgttaaatttttgatacaatgaatcgcattaaatttcaactcttgatatgccgcatggaaaacagaaagctctccactcagaattt |
42998476 |
T |
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| Q |
101 |
nnnngggtttcccacacatgtgcaatggttttcccatccactctgct |
147 |
Q |
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| T |
42998475 |
ttttcggcttcccacacatgtgcaatggttttcccatccactctgct |
42998429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 42999168 - 42999022
Alignment:
| Q |
1 |
ataacgtgctattttgttaaattttttatataatgaatcgcattaaatttcaactcttgatatgccgcatggaaaacagaaagctctccactcagaannn |
100 |
Q |
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| T |
42999168 |
ataacgtgccattttgttaaatttttgatacaatgaatcgcattaaatttcaactcttgatatgccgcatggaaaacagaaagctctccactcagaattt |
42999069 |
T |
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| Q |
101 |
nnnngggtttcccacacatgtgcaatggttttcccatccactctgct |
147 |
Q |
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| T |
42999068 |
ttttcggcttcccacacacgttcaatggttttcccatccactctgct |
42999022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 42998403 - 42998346
Alignment:
| Q |
165 |
gttggtgttcatatcatcctagttgttggaattcaccgtaaattgctaagatcaacaa |
222 |
Q |
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| T |
42998403 |
gttggtgttcatatcattctggttgttggaattcactgtaaattgttaagatcaacaa |
42998346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 42998996 - 42998939
Alignment:
| Q |
165 |
gttggtgttcatatcatcctagttgttggaattcaccgtaaattgctaagatcaacaa |
222 |
Q |
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| T |
42998996 |
gttggtgttcatatcattctggttgttggaattcactataaattgttaagatcaacaa |
42998939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21654709 - 21654767
Alignment:
| Q |
1 |
ataacgtgctattttgttaaattttttatataatgaatcgcattaaatttcaactcttg |
59 |
Q |
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| T |
21654709 |
ataacgtgccattttgttaaatttgtgatacaatgaattgcattaaatttcacctcttg |
21654767 |
T |
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