View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_54 (Length: 237)
Name: NF2705_low_54
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 32207687 - 32207894
Alignment:
| Q |
19 |
taaatcgtatatgattatatcttttaatttgaattaataaaggagcatataaatataaattataatcatttagaacgatgaagaataattttttatcgaa |
118 |
Q |
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| T |
32207687 |
taaatcgtatatgattatatattttaatttgaattaataacggagcatataaatataaattataatcatttagaacgatgaagaa-atttttttatcaaa |
32207785 |
T |
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| Q |
119 |
tgaattattcaaatataagatttcaaactgaaatcaatattttattttttcactaatcataaaatttatttgtgcagtataacttgtgcattgcaacaac |
218 |
Q |
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| T |
32207786 |
taaattattcaaatataagatttcaaactgaaatcaatattttattttttcactaatcataaaatttatttgtgtagtacaatttgtgcgttgcaacaac |
32207885 |
T |
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| Q |
219 |
acacaggtt |
227 |
Q |
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| T |
32207886 |
acacaggtt |
32207894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 32221111 - 32221283
Alignment:
| Q |
57 |
aaaggagcatataaatataaattataatcatttagaacgatgaagaataattttttatcgaatgaattat--tcaaatataagatttcaaactgaaatca |
154 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
32221111 |
aaaggagcatataaatataaattataatcatttagcacgatgaagaataattttatatcgaataaattatgatcaaatataagatttcaaactgaaatca |
32221210 |
T |
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| Q |
155 |
atattttattttttcactaatcataaaatttatttgtgcagtataacttgtgcattgcaacaacacacaggtt |
227 |
Q |
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| T |
32221211 |
atattttatttttccactaatcataaaatttatttgtgcggtataacttgtgcattgcaacaacacacaggtt |
32221283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 32220909 - 32220962
Alignment:
| Q |
19 |
taaatcgtatatgattatatcttttaatttgaattaataaaggagcatataaat |
72 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
32220909 |
taaatcgtgtatgattatatattttaatttgaattaataagggagcatataaat |
32220962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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