View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_55 (Length: 236)
Name: NF2705_low_55
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_55 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 32716869 - 32716675
Alignment:
| Q |
16 |
ggtaatacttgttcaaaaccttcctctcacccatctctcttcaaattcaacgacgcggagaacaacctagatagggtttctttctctctttctatttgtg |
115 |
Q |
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| T |
32716869 |
ggtaatacttgttcaaaaccttcctctcacccatctctcttcaaattcaacgacgcggagaacaacctagatagggtttctttctctctttctatttgtg |
32716770 |
T |
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| Q |
116 |
tgaagagcgataattatcggtttcaaaaggttatgaacaatatataagagcaaactaggttatcaggaaaactcaatagtgtgtgtgtatatata |
210 |
Q |
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| T |
32716769 |
tgaagagcgataattatcggtttcaaaaggttatgaacaatatataagagcaaactaggttatcagaaagactcaatagtgtatatatatatata |
32716675 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 1835798 - 1835757
Alignment:
| Q |
16 |
ggtaatacttgttcaaaaccttcctctcacccatctctcttc |
57 |
Q |
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| T |
1835798 |
ggtaatacttgttcaaaaccttcctttcacccatctttcttc |
1835757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 32260139 - 32260172
Alignment:
| Q |
203 |
tatatatagagggcatatcaaatgagaggactct |
236 |
Q |
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| T |
32260139 |
tatatatagaggccatatcaaatgagaggactct |
32260172 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 37727620 - 37727653
Alignment:
| Q |
203 |
tatatatagagggcatatcaaatgagaggactct |
236 |
Q |
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| T |
37727620 |
tatatatatagggcatatcaaatgagaggactct |
37727653 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 3772587 - 3772615
Alignment:
| Q |
203 |
tatatatagagggcatatcaaatgagagg |
231 |
Q |
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| T |
3772587 |
tatatatagagggcatatcaaatgagagg |
3772615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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