View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2705_low_59 (Length: 229)
Name: NF2705_low_59
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_59 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 45142361 - 45142133
Alignment:
| Q |
1 |
taaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatcaagaattac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142361 |
taaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactatgatcaagaattac |
45142262 |
T |
|
| Q |
101 |
aaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggaccgcttatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45142261 |
aaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaattggaccacttatt |
45142162 |
T |
|
| Q |
201 |
ttttaatagtagtaggaacacaactatta |
229 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
45142161 |
ttttaatagtagtaggcacacaactatta |
45142133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
32 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
83 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
59 |
atcctcactgaggtcgatctcatcactatgatcaag |
94 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
59 |
atcctcactgaggtcgatctcatcactatgatcaag |
94 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University