View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_65 (Length: 214)
Name: NF2705_low_65
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 41181119 - 41180968
Alignment:
| Q |
20 |
atgaatcgaatatgcaatattatgaaggctaggttgttgtcaaaaagcaacaaaccgtataacctaagtacaatgtcaaatgagcaatggccactgcatt |
119 |
Q |
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| T |
41181119 |
atgaatcgaatatacaatagtatgaaggctaggttgttgtcaaaaagcaacaaaccgtataacctaagtacaatgtcaaatgagcagtggccactgcatt |
41181020 |
T |
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| Q |
120 |
gccgtctgattgcaatgaaaaataattaagggtttccacatttttcgcgaac |
171 |
Q |
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| T |
41181019 |
gccgtttgattgcaatgaaaaataattaagggttcccacatttttcgtgaac |
41180968 |
T |
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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 9256425 - 9256492
Alignment:
| Q |
93 |
tgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
160 |
Q |
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| T |
9256425 |
tgtcagatgagcaagggccactgcattgccgtctgaatgcaatgaaaaataagtaagggttcccacat |
9256492 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 15218219 - 15218145
Alignment:
| Q |
86 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
160 |
Q |
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| T |
15218219 |
agtacagtgtcaaatgagcaagggccgctgcattgccgcctggatgtagtgaaaaataagcaagggttcccacat |
15218145 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 27453102 - 27453028
Alignment:
| Q |
86 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
160 |
Q |
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| T |
27453102 |
agtacaatgtcaaatgagcaagggccgctgcatcaccgcctggatgtagtgaaaaataagcaagggtttccacat |
27453028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 45329591 - 45329517
Alignment:
| Q |
86 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
160 |
Q |
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| T |
45329591 |
agtacagtgtcaaatgaacaagggccactgcatcgccgtctggatgtagtgaaaaataagcaagggttcccacat |
45329517 |
T |
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