View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2705_low_68 (Length: 208)
Name: NF2705_low_68
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_68 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 33413357 - 33413533
Alignment:
| Q |
18 |
cattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33413357 |
cattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaa |
33413456 |
T |
|
| Q |
118 |
ctgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33413457 |
ctgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
33413533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 33420502 - 33420677
Alignment:
| Q |
18 |
cattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| |||||||||||| ||||||| ||| |||| ||||| |
|
|
| T |
33420502 |
cattgaaccttggagctgctgcaagtgtttgtggtgttgtcgtcggatcaatggctattgcacaagtttttgcttctgtttatttcagtatgtggtcgaa |
33420601 |
T |
|
| Q |
118 |
ctgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctat |
193 |
Q |
| |
|
| ||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
33420602 |
ccgatcgtgtctaagacttatcatattcagtgttattgttcatctaattgtaaacatcaagtatgcaatggcctat |
33420677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 28812184 - 28812008
Alignment:
| Q |
18 |
cattgaaccttggagctgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcacatgtttttgcttctatttattttagtgtgtgatcgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||| |||||||||| || ||||||| |||||||||||| ||||||| |||| ||| ||||| |
|
|
| T |
28812184 |
cattgaaccttggagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtttttgcttctgtttatttcagtgcgtggtcgaa |
28812085 |
T |
|
| Q |
118 |
ctgattgtgtctaagacctatcatattcagtgccattgttcttctaattgtaaacatgatgtatgcaatggcctatg |
194 |
Q |
| |
|
| ||| || |||||||||| ||||||||||| ||||||||||| | |||| |||||| ||||||||| ||||||||| |
|
|
| T |
28812084 |
ccgatcgtatctaagacctctcatattcagtaccattgttcttatgattggaaacatcatgtatgcattggcctatg |
28812008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University