View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2705_low_7 (Length: 540)
Name: NF2705_low_7
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2705_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 3094423 - 3093908
Alignment:
| Q |
18 |
ttgaggattagttccaggagaatgattaaaggtagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctacca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094423 |
ttgaggattagttccaggagaatgattaaaggtagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctacca |
3094324 |
T |
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| Q |
118 |
acttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaattta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094323 |
acttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaattta |
3094224 |
T |
|
| Q |
218 |
ctggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094223 |
ctggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgtt |
3094124 |
T |
|
| Q |
318 |
catgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094123 |
catgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatga |
3094024 |
T |
|
| Q |
418 |
cccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggctt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094023 |
cccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggctt |
3093924 |
T |
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| Q |
518 |
ctggggtcctttgctt |
533 |
Q |
| |
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|||||||||||||||| |
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| T |
3093923 |
ctggggtcctttgctt |
3093908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 3085577 - 3085078
Alignment:
| Q |
18 |
ttgaggattagttccaggagaatgattaaaggtagaaccgtcgattacgcgcaatgcgtggacaccagcaaccttataatcactatcaacaaccctacca |
117 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||| |
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| T |
3085577 |
ttgaggattagttccaggagaatagttgaaggtagaaccgtcgattacgcgcaatgcatcgacaccaagaaccttataatcattatcaacaaccctacca |
3085478 |
T |
|
| Q |
118 |
acttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgtttaggcaataaattta |
217 |
Q |
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| T |
3085477 |
acttgacaaccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacattgaagtatttgtgtgcttaggcaataaattta |
3085378 |
T |
|
| Q |
218 |
ctggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcctttgaatctattattttctcaattgtgtt |
317 |
Q |
| |
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|| ||| |||||| |||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||||| |
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| T |
3085377 |
cttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagcatttgaatctattattttctcaattgtgcc |
3085278 |
T |
|
| Q |
318 |
catgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcatttggatcggtgtttcggagctccaaatga |
417 |
Q |
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||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
3085277 |
catgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcatttggatcagtgtttcggagctccaaatga |
3085178 |
T |
|
| Q |
418 |
cccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggctt |
517 |
Q |
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| T |
3085177 |
cctgttgaaattggacctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatggctt |
3085078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
127 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
176 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
105 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
149 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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