View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2705_low_8 (Length: 522)

Name: NF2705_low_8
Description: NF2705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2705_low_8
NF2705_low_8
[»] chr6 (8 HSPs)
chr6 (18-273)||(21280746-21281001)
chr6 (39-117)||(21140837-21140915)
chr6 (39-117)||(21250356-21250434)
chr6 (39-132)||(21155778-21155871)
chr6 (47-112)||(21148156-21148223)
chr6 (39-117)||(21296278-21296355)
chr6 (47-84)||(21189691-21189728)
chr6 (60-117)||(21151548-21151605)
[»] scaffold0060 (5 HSPs)
scaffold0060 (40-117)||(22707-22784)
scaffold0060 (56-114)||(16782-16840)
scaffold0060 (219-328)||(16608-16717)
scaffold0060 (193-251)||(22527-22585)
scaffold0060 (36-109)||(10295-10374)
[»] scaffold1787 (1 HSPs)
scaffold1787 (47-117)||(846-914)
[»] chr5 (3 HSPs)
chr5 (233-328)||(21638103-21638198)
chr5 (36-109)||(21638288-21638367)
chr5 (56-130)||(2322942-2323016)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 21280746 - 21281001
Alignment:
Q  18 gaacaaattctagacaggatagtgcacagttttgaataaaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaatt 117  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21280746 gaacaaattttagacaggatagtgcacaattttgaataaaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaatt 21280845  T
Q  118 acttattcaagtgtgaaccactaaactagaaaattgatatgacagnnnnnnnnnnnnnnnnnnnnnnncaagaacgaggtgaaggtaaagattacacacc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||                       |||| |||||||||||||||||||||||||||    
T  21280846 acttattcaagtgtgaaccactaaactagaaaattgatatgacagaagagaaaaagaaaaataataaacaaggacgaggtgaaggtaaagattacacacc 21280945  T
Q  218 tgatcagtggtgcaacagtagtgaaatgtggattaaaggtttccgtgagtttgaaa 273  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21280946 tgatcagtggtgcaacagtagtaaaatgtggattaaaggtttccgtgagtttgaaa 21281001  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 21140837 - 21140915
Alignment:
Q  39 gtgcacagttttgaataaaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaatt 117  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||| | || | |||||||||||||||||||    
T  21140837 gtgcatagttttgaataaaaatgaagacatggtcataagagaacaactaatggaatttcgaatcaatgtttcttgaatt 21140915  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 21250434 - 21250356
Alignment:
Q  39 gtgcacagttttgaataaaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaatt 117  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||| |||||||    
T  21250434 gtgcacagttttgaataaaaacgaagacatggccaaaagataacaactaatggaattccaaatcaatgtttattgaatt 21250356  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 21155778 - 21155871
Alignment:
Q  39 gtgcacagttttgaataaaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaattacttattcaagtgtg 132  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||||| |||| | || ||||||||| ||||||||||| | || |||||||||    
T  21155778 gtgcacaattttgaataaaaatgaaggcatcgccataagagaacaacgaatggaatttcaaatcaatatttcttgaattccatactcaagtgtg 21155871  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 21148156 - 21148223
Alignment:
Q  47 ttttgaataaaaatgaagacatggccata--agagaacaactaatgtagttccaaatcaatgtttctt 112  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| | ||| |||||||||||||||    
T  21148156 ttttgaataaaaatgaagacatggccataagagagaacaactaatggaattcaaaatcaatgtttctt 21148223  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 21296278 - 21296355
Alignment:
Q  39 gtgcacagttttgaataaaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaatt 117  Q
    ||||||| || |||||||||||||||| ||| ||||| |||||||||||||| | || ||||||||||||| |||||||    
T  21296278 gtgcacaattctgaataaaaatgaagagatgaccata-gagaacaactaatgcaatttcaaatcaatgtttgttgaatt 21296355  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 21189691 - 21189728
Alignment:
Q  47 ttttgaataaaaatgaagacatggccataagagaacaa 84  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21189691 ttttgaataaaaatgaagacatggccataagagaacaa 21189728  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 21151548 - 21151605
Alignment:
Q  60 tgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaatt 117  Q
    ||||||||||| ||||||||||||||||||| | |||||||| | | |||||||||||    
T  21151548 tgaagacatggtcataagagaacaactaatggaattccaaatgattttttcttgaatt 21151605  T

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Target: scaffold0060 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 22784 - 22707
Alignment:
Q  40 tgcacagttttgaataaaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaatt 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  22784 tgcacaattttgaataaaaatgaagacatggccataagagaacaactaatggaattccaaatcaatgttttttgaatt 22707  T

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Target: scaffold0060; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 16840 - 16782
Alignment:
Q  56 aaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttga 114  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  16840 aaaatgaagacatggccataagagaacaactaatggaattccaaatcaatgtttcttga 16782  T

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Target: scaffold0060; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 16717 - 16608
Alignment:
Q  219 gatcagtggtgcaacagtagtgaaatgtggattaaaggtttccgtgagtttgaaagagaagaagtgcatttgatgtaattattatggaaaatggtaaata 318  Q
    ||||| |||| ||||| ||||  ||| ||||||||||||||| |||||||  || |||||||||| |||||  ||||||||||| |  ||||| ||||||    
T  16717 gatcaatggtacaacaatagtacaatatggattaaaggtttctgtgagttccaaggagaagaagtacatttcgtgtaattattaagttaaatgctaaata 16618  T
Q  319 ttgtgaatat 328  Q
    ||||||||||    
T  16617 ttgtgaatat 16608  T

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Target: scaffold0060; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 22585 - 22527
Alignment:
Q  193 gaggtgaaggtaaagattacacacctgatcagtggtgcaacagtagtgaaatgtggatt 251  Q
    ||||||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||||    
T  22585 gaggtgaaggtcaagatgacatacctgatcagtggtgcagcagtagtaaaatgtggatt 22527  T

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Target: scaffold0060; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 10374 - 10295
Alignment:
Q  36 atagtgcacagttttgaataaaaatgaagac------atggccataagagaacaactaatgtagttccaaatcaatgttt 109  Q
    ||||| |||||||||||||||||||||||||      |||||||||||||||||||||| | | ||||||| ||||||||    
T  10374 atagtacacagttttgaataaaaatgaagacatgggcatggccataagagaacaactaaaggaattccaaaacaatgttt 10295  T

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Target: scaffold1787 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 914 - 846
Alignment:
Q  47 ttttgaataaaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaatt 117  Q
    |||| |||| |||||||||||||||||||||||||||||||||| | |  |||||||||||||||||||||    
T  914 ttttaaatataaatgaagacatggccataagagaacaactaatggaat--caaatcaatgtttcttgaatt 846  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 21638198 - 21638103
Alignment:
Q  233 cagtagtgaaatgtggattaaaggtttccgtgagtttgaaagagaagaagtgcatttgatgtaattattatggaaaatggtaaatattgtgaatat 328  Q
    |||||||  ||||||||| ||||||||  ||  ||| ||| ||||||||||||||||  ||||||||||   ||||||| ||||||||||||||||    
T  21638198 cagtagtacaatgtggatgaaaggtttttgtatgttcgaaggagaagaagtgcatttcgtgtaattattgacgaaaatgctaaatattgtgaatat 21638103  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 21638367 - 21638288
Alignment:
Q  36 atagtgcacagttttgaataaaaatgaagac------atggccataagagaacaactaatgtagttccaaatcaatgttt 109  Q
    ||||| |||||||||||||||||||||||||      |||||||||||||||||| ||| | | ||||||| ||||||||    
T  21638367 atagtacacagttttgaataaaaatgaagacatgggcatggccataagagaacaagtaaaggaattccaaaacaatgttt 21638288  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 2323016 - 2322942
Alignment:
Q  56 aaaatgaagacatggccataagagaacaactaatgtagttccaaatcaatgtttcttgaattacttattcaagtg 130  Q
    ||||| ||||||| |||||||||||||| |||||  | ||||||||||||| || ||||||| | || |||||||    
T  2323016 aaaataaagacattgccataagagaacatctaatagaattccaaatcaatgcttattgaattccatactcaagtg 2322942  T

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