View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2706_high_1 (Length: 462)
Name: NF2706_high_1
Description: NF2706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2706_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 41199007 - 41198571
Alignment:
| Q |
11 |
cacaggcaaataacaaccatgaaaaaagcttcaatctccaaagacacttaacatacaccatcaacaatgtacgatgtagtccccaaggcgtaacttaagt |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41199007 |
cacagacaaataacaaccatgaaaaaagcttcaatctccaaagacacttaacatacaccatcaacaatgtacgatgtagtccccaaggcgtaacttaagt |
41198908 |
T |
|
| Q |
111 |
ggttaattcaggatacccttgggagtttcagaatgaggtttagggttcaaattctagctactaacattttccgtaagaaaaacaatgtactactgataca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198907 |
ggttaattcaggatacccttgggagtttcagaatgaggtttagggttcaaattctagctactaacattttccgtaagaaaaacaatgtactactgataca |
41198808 |
T |
|
| Q |
211 |
caaacatgttcaagnnnnnnnnnnatcgacagttatgttgaaggttaatcataatgcaatttgattaaatattccatgattgacgaagattacacatcag |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198807 |
caaacatgttcaagttttttttttatcgacagttatgttgaaggttaatcataatgcaatttgattaaatattccatgattgacgaagattacacatcag |
41198708 |
T |
|
| Q |
311 |
aatgacagtcaacttgaaagtcaaataaggggtctttatcttgatgtaaaatagatatgaaaattgaaaaccaacacattcatcatagcaaacaatgatt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198707 |
aatgacagtcaacttgaaagtcaaataaggggtctttatcttgatgtaaaatagatatgaaaattgaaaaccaacacattcatcatagcaaacaatgatt |
41198608 |
T |
|
| Q |
411 |
catcagcaaaaaatcaaatatcaggcatgaaaagttt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41198607 |
catcagcaaaaaatcaaatatcaggcatgaaaagttt |
41198571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 41208590 - 41208525
Alignment:
| Q |
355 |
tgtaaaatagatatgaaaattgaaaaccaacacattcatcatagcaaacaatgattcatcagcaaaa |
421 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
41208590 |
tgtaaaatagatatgaaa-ttgaaaaccaacacattcatcatagcaaacaatgatgcatcaacaaaa |
41208525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 41208928 - 41208842
Alignment:
| Q |
64 |
tacaccatcaacaatgtacgatgtagtccccaaggcgtaacttaagtggttaattcaggatacccttgggagtttcagaatgaggtt |
150 |
Q |
| |
|
||||||||||||||||||| |||| ||||| || | ||||| |||||||| |||||||| ||| ||||||| ||||||||||| |
|
|
| T |
41208928 |
tacaccatcaacaatgtactatgtggtccctaatgtataactcaagtggtttattcaggacacctgaaggagtttgagaatgaggtt |
41208842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University