View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2706_high_11 (Length: 205)
Name: NF2706_high_11
Description: NF2706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2706_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 37751443 - 37751373
Alignment:
| Q |
120 |
gaagaagaagagtttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacag |
190 |
Q |
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| T |
37751443 |
gaagaagaagcatttgaaaaatgggaaaaatgtttctatgggatttggatttgttgagtttgactccacag |
37751373 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 37735936 - 37735869
Alignment:
| Q |
123 |
gaagaagagtttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacag |
190 |
Q |
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| T |
37735936 |
gaagaagcatttgaaaaatgggaaaaatgtttctatgggatttggatttgttgagtttgactccacag |
37735869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 38611128 - 38611190
Alignment:
| Q |
123 |
gaagaagagtttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactc |
185 |
Q |
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| T |
38611128 |
gaagaagcatttgaaaaaagggaaaaatgtttctatgggatttggatttgttgagtttgactc |
38611190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 37754717 - 37754630
Alignment:
| Q |
12 |
ttttcattcgtttatgtctcaatccaactttcaatcgtattccgtctttcagaatatgtgtttggagaaaagtcttgtgtcctaatat |
99 |
Q |
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| T |
37754717 |
ttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtggaacagtcttgtgtcctgatat |
37754630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 37760691 - 37760604
Alignment:
| Q |
12 |
ttttcattcgtttatgtctcaatccaactttcaatcgtattccgtctttcagaatatgtgtttggagaaaagtcttgtgtcctaatat |
99 |
Q |
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| T |
37760691 |
ttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtggaacagtcttgtgtcctgatat |
37760604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 37738848 - 37738773
Alignment:
| Q |
23 |
ttatgtctcaatccaactttcaatcgtattccgtctttcagaatatgtgtttggagaaaagtcttgtgtcctaatat |
99 |
Q |
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| T |
37738848 |
ttatgtcttaattcaactttcaa-cgtatttcttcttccataatatgtggttgtggaacagtcttgtgtcctaatat |
37738773 |
T |
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