View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2706_low_2 (Length: 451)

Name: NF2706_low_2
Description: NF2706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2706_low_2
NF2706_low_2
[»] chr4 (12 HSPs)
chr4 (19-343)||(19505486-19505810)
chr4 (19-113)||(31351679-31351773)
chr4 (27-107)||(9460178-9460257)
chr4 (163-227)||(19481133-19481197)
chr4 (19-102)||(35010400-35010483)
chr4 (19-113)||(13538261-13538355)
chr4 (27-113)||(35130617-35130703)
chr4 (19-113)||(38415501-38415595)
chr4 (19-95)||(55967788-55967864)
chr4 (158-221)||(19532458-19532521)
chr4 (22-113)||(50263996-50264086)
chr4 (22-113)||(54733283-54733373)
[»] chr2 (2 HSPs)
chr2 (171-329)||(36183015-36183173)
chr2 (19-55)||(9198994-9199030)
[»] chr8 (3 HSPs)
chr8 (19-113)||(28300095-28300189)
chr8 (19-81)||(12959715-12959777)
chr8 (43-107)||(15837171-15837235)
[»] scaffold0166 (1 HSPs)
scaffold0166 (18-113)||(35864-35959)
[»] chr5 (6 HSPs)
chr5 (18-113)||(24793481-24793576)
chr5 (19-107)||(43406016-43406104)
chr5 (158-221)||(30890937-30891000)
chr5 (158-221)||(30895762-30895825)
chr5 (19-113)||(30327663-30327757)
chr5 (18-114)||(28282342-28282438)
[»] chr6 (8 HSPs)
chr6 (27-107)||(7326343-7326423)
chr6 (173-221)||(14223288-14223336)
chr6 (173-221)||(14229893-14229941)
chr6 (27-113)||(6922640-6922726)
chr6 (19-99)||(20599412-20599492)
chr6 (19-113)||(12606658-12606752)
chr6 (33-113)||(5925603-5925683)
chr6 (66-114)||(29045820-29045868)
[»] chr7 (7 HSPs)
chr7 (19-102)||(27227281-27227364)
chr7 (21-102)||(13054605-13054686)
chr7 (19-107)||(9667243-9667331)
chr7 (19-113)||(25091169-25091262)
chr7 (49-102)||(5808401-5808454)
chr7 (21-92)||(36876999-36877070)
chr7 (19-113)||(47684493-47684587)
[»] chr3 (6 HSPs)
chr3 (19-113)||(51829563-51829656)
chr3 (19-71)||(33439984-33440036)
chr3 (19-107)||(55009530-55009618)
chr3 (19-70)||(9737625-9737676)
chr3 (19-107)||(17002907-17002992)
chr3 (35-113)||(38745299-38745377)
[»] chr1 (1 HSPs)
chr1 (27-114)||(8757279-8757366)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 19505486 - 19505810
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatctaaatat 118  Q
    ||||||||||| ||| || || |||||| || ||||||| ||||| || ||||||||||||| ||||||||||| ||||||||| |||| ||||||||||    
T  19505486 tagctcacttgatagttaacaaagataatttatgcagggatcgggatttgaatcccagattcatcatttctccacacataatgtgtgtgaatctaaatat 19505585  T
Q  119 attagtttttgatgtaattgatttcattttaataaaattttagagcaaagttatatggatggccaaacacatatgtttttacaaaggcaatgggagaaat 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19505586 attagattttgatgtaattgatttcattttaataaaattttagagcaaagttatatggatggccaaacacatatgtttttacaaaggcaatgggagaaat 19505685  T
Q  219 gctagtgggaactatgaaggaaaaattgtcaattgttattgtgagacctacaatcattaccagcacttacaaagaacctttccctggttgggttgaagga 318  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19505686 gctagtgggaactatgaaggaaaaattgtccattgttattgtgagacctacaatcattaccagcacttacaaagaacctttccctggttgggttgaagga 19505785  T
Q  319 gtaaggtaaattaatcaatcaccaa 343  Q
    |||||||||||||||||||||||||    
T  19505786 gtaaggtaaattaatcaatcaccaa 19505810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 31351773 - 31351679
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||  || |||| | |||||||||| ||||||| | |||| |||||    
T  31351773 tagctcagttggtagctaccagagataatttgtgcaggggtcggggttcgaactccggatttcccatttctccacacataatatgtgtgaatcta 31351679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 9460178 - 9460257
Alignment:
Q  27 ttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtg 107  Q
    |||||||||| ||||||||| ||||| |||| ||||||||| ||||||| ||||| |||||||||| ||||||||| ||||    
T  9460178 ttggtagctatcagagataatttgtgtaggg-tcggggttcaaatcccatattccccatttctccacacataatgtgtgtg 9460257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 19481133 - 19481197
Alignment:
Q  163 gcaaagttatatggatggccaaacacatatgtttttacaaaggcaatgggagaaatgctagtggg 227  Q
    ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||| |||||    
T  19481133 gcaaaattatatggatggccaaacacatacgtattcacaaaagcaatgggagaaatgcttgtggg 19481197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 35010483 - 35010400
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgt 102  Q
    ||||||| |||||||||| ||||||||| ||||||||| |||||||||||||  || |||| | || ||||||| |||||||||    
T  35010483 tagctcagttggtagctatcagagataatttgtgcaggagtcggggttcgaactccggatttcccacttctccacacataatgt 35010400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 13538355 - 13538261
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| |||||||||| ||||||||| ||||| |||||  || ||||||| |||| ||| | || ||||||||||||||||| |||| |||||    
T  13538355 tagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtgaatcta 13538261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 35130703 - 35130617
Alignment:
Q  27 ttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| | || |||| || |||| |||| |||| |||||    
T  35130703 ttggtagctaccagagataatttgtgcaggggccggggttcgaaccccggatttcccacttcttcacacattatgtgtgtgaatcta 35130617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 38415595 - 38415501
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| |||||||||| ||  ||||| |||||||| |||| || |||||| |||| ||||  ||||||| |||||||||||| |||| |||||    
T  38415595 tagctcagttggtagctatcaaggataatttgtgcagaggtcaggattcgaaccccaaattctccatttcttcatacataatgtgtgtgaatcta 38415501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 55967788 - 55967864
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatac 95  Q
    ||||||| |||||| ||||||  ||||| ||||| ||||| ||||||||||| ||| |||||| || ||||||||||    
T  55967788 tagctcaattggtaactaccaaggataatttgtgtaggggccggggttcgaaccccggattccccacttctccatac 55967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 19532458 - 19532521
Alignment:
Q  158 ttagagcaaagttatatggatggccaaacacatatgtttttacaaaggcaatgggagaaatgct 221  Q
    |||||||||| ||  |||| ||||||||||||||||| || ||||| ||||||||||| |||||    
T  19532458 ttagagcaaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagagatgct 19532521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 50264086 - 50263996
Alignment:
Q  22 ctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    |||| ||||||||||| || ||||| ||||||||||| ||||| ||||| ||| |||||| || ||||||| |||| |||| |||| |||||    
T  50264086 ctcagttggtagctac-agggataatttgtgcaggggccggggctcgaaacccggattccccacttctccacacatgatgtgtgtgaatcta 50263996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 54733373 - 54733283
Alignment:
Q  22 ctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    |||| |||||||||||||| ||| | |||||||| ||| |||||||||||  | |||||||||  |||||| ||||||||| |||| |||||    
T  54733373 ctcagttggtagctaccag-gatcatttgtgcagtggttggggttcgaattacggattcctcacctctccacacataatgtgtgtgaatcta 54733283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 171 - 329
Target Start/End: Complemental strand, 36183173 - 36183015
Alignment:
Q  171 atatggatggccaaacacatatgtttttacaaaggcaatgggagaaatgctagtgggaactatgaaggaaaaattgtcaattgttattgtgagacctaca 270  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| || | |||| | ||||||||  ||||  ||||||||||  | || ||     
T  36183173 atatggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgcttgtagaaactttcaaggaaaacatgtctgttgttattgttcgtcccacc 36183074  T
Q  271 atcattaccagcacttacaaagaacctttccctggttgggttgaaggagtaaggtaaat 329  Q
    ||  |||| |||||||  | ||||||||||||||| |||||||||||  ||||||||||    
T  36183073 attgttactagcacttttagagaacctttccctggatgggttgaaggcttaaggtaaat 36183015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 9199030 - 9198994
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcag 55  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  9199030 tagctcagttggtagctaccagagataatttgtgcag 9198994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 28300095 - 28300189
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| |||||||||||||  ||||| ||||||||||| ||||||||||| ||| |||||| || ||||||||||||||||| |||| |||||    
T  28300095 tagctcagttggtagctaccaatgataatttgtgcaggggccggggttcgaaccccggattccccacttctccatacataatgtgtgtgaatcta 28300189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 12959715 - 12959777
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcc 81  Q
    ||||||| |||||||||| ||| ||||| |||||||||||| |||||||||| ||||||||||    
T  12959715 tagctcagttggtagctatcagggataacttgtgcaggggttggggttcgaaccccagattcc 12959777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 15837171 - 15837235
Alignment:
Q  43 ataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtg 107  Q
    |||| |||||||||||||||||||||||  |  |||||| ||||| |||| ||||||||| ||||    
T  15837171 ataatttgtgcaggggtcggggttcgaactctggattccccatttttccacacataatgtgtgtg 15837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 35864 - 35959
Alignment:
Q  18 atagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    |||| ||| |||||||||| ||||||||| |||||||||||||||||| |||| |||||||| | |||||||| | ||||||||| |||| |||||    
T  35864 atagttcagttggtagctatcagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatcta 35959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 24793481 - 24793576
Alignment:
Q  18 atagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    |||| ||| |||||||||| ||||||||| |||||||||||||||||| |||| |||||||| | |||||||| | ||||||||| |||| |||||    
T  24793481 atagttcagttggtagctatcagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctctacacataatgtatgtgaatcta 24793576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 43406104 - 43406016
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtg 107  Q
    ||||||| |||||||||||||||||||| ||||||| ||  ||| ||||||| | |||||||  || ||||||| ||||||||| ||||    
T  43406104 tagctcagttggtagctaccagagataatttgtgcaaggaccggagttcgaacctcagattctccacttctccacacataatgtgtgtg 43406016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 30890937 - 30891000
Alignment:
Q  158 ttagagcaaagttatatggatggccaaacacatatgtttttacaaaggcaatgggagaaatgct 221  Q
    |||||||||| ||  |||| ||||||||||||||||| || ||||| |||||||||||||||||    
T  30890937 ttagagcaaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagaaatgct 30891000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 30895762 - 30895825
Alignment:
Q  158 ttagagcaaagttatatggatggccaaacacatatgtttttacaaaggcaatgggagaaatgct 221  Q
    |||||||||| ||  |||| ||||||||||||||||| || ||||| |||||||||||||||||    
T  30895762 ttagagcaaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagaaatgct 30895825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 30327663 - 30327757
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| |||||||||| ||||||||| || |||||||| ||||||||||| |||  ||||  || ||||||| ||||||| | |||| |||||    
T  30327663 tagctcagttggtagctatcagagataatttatgcaggggccggggttcgaaccccgaattcgccacttctccacacataatatgtgtgaatcta 30327757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 28282342 - 28282438
Alignment:
Q  18 atagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatctaa 114  Q
    |||| ||| ||||||||||| |||||||| ||||| |||||||| | ||| || | |  |||||||| ||||||| ||||||| | |||| ||||||    
T  28282342 atagttcagttggtagctactagagataatttgtggaggggtcgagattcaaacctcgtattcctcacttctccacacataatatgtgtgaatctaa 28282438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 7326423 - 7326343
Alignment:
Q  27 ttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtg 107  Q
    |||||||||||||| ||||| ||| |||||||||||| |||||| || ||||||| || ||||||| ||||||||| ||||    
T  7326423 ttggtagctaccagggataatttgagcaggggtcgggtttcgaaccctagattccccacttctccacacataatgtgtgtg 7326343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 14223336 - 14223288
Alignment:
Q  173 atggatggccaaacacatatgtttttacaaaggcaatgggagaaatgct 221  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  14223336 atggatggccaaacacctatgtatttacaaaagcaatgggagaaatgct 14223288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 14229941 - 14229893
Alignment:
Q  173 atggatggccaaacacatatgtttttacaaaggcaatgggagaaatgct 221  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  14229941 atggatggccaaacacctatgtatttacaaaagcaatgggagaaatgct 14229893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 6922726 - 6922640
Alignment:
Q  27 ttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    |||||||||||||   |||| |||||||||||||||||||| ||  ||||||||| || ||||||| | ||||||| |||| |||||    
T  6922726 ttggtagctaccatgaataatttgtgcaggggtcggggttcaaactccagattccccacttctccacatataatgtgtgtgaatcta 6922640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 20599492 - 20599412
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataa 99  Q
    ||||||| |||||||||||||| ||||   |||||| ||||||||||| ||| ||| |||||| || ||||||| ||||||    
T  20599492 tagctcagttggtagctaccagggatattatgtgcaagggtcggggtttgaaccccggattccccacttctccacacataa 20599412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 12606658 - 12606752
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| ||||||||||| || ||||| ||||| |||  ||| |||||||| |||||||||| || |||| || | ||||||| |||| |||||    
T  12606658 tagctcagttggtagctactagggataatttgtgtaggaatcgaggttcgaaccccagattccccacttcttcacatataatgtgtgtgaatcta 12606752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 5925603 - 5925683
Alignment:
Q  33 gctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    |||||||||||| | |||||||||||  ||||||| |||||  |||||| || |||| || ||||||||| |||| |||||    
T  5925603 gctaccagagatcatttgtgcaggggctggggttcaaatcctggattccccacttcttcacacataatgtgtgtgaatcta 5925683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 29045820 - 29045868
Alignment:
Q  66 tcgaatcccagattcctcatttctccatacataatgtttgtgcatctaa 114  Q
    ||||||||| |||||| || ||||||||||||||||| |||| ||||||    
T  29045820 tcgaatcccggattccccacttctccatacataatgtgtgtgaatctaa 29045868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 27227364 - 27227281
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgt 102  Q
    ||||||| |||||| ||||||||||||| ||||  |||||| | | ||||||||||||||||| || ||||||| |||||||||    
T  27227364 tagctcagttggtacctaccagagataatttgtataggggttgtgtttcgaatcccagattccccacttctccacacataatgt 27227281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 13054605 - 13054686
Alignment:
Q  21 gctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgt 102  Q
    ||||| |||||||||||||| || ||  |||||||||| ||||||||||| |||||||| | || ||||||| |||||||||    
T  13054605 gctcaattggtagctaccagggaaaatatgtgcaggggccggggttcgaaccccagatttcccacttctccacacataatgt 13054686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 9667331 - 9667243
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtg 107  Q
    ||||||| |||||||||| ||||||||| ||||| |||||  || ||||||| |||| ||| | || ||||||||||||||||| ||||    
T  9667331 tagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccacttctccatacataatgtgtgtg 9667243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 25091169 - 25091262
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| |||||||||||||| ||||| |||||||||||||| ||||| ||  |||||||  ||| |||| || ||||||||| |||| |||||    
T  25091169 tagctcagttggtagctaccagggataatttgtgcaggggtcgaggttcaaactccagatt-ttcacttcttcacacataatgtgtgtgaatcta 25091262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 5808454 - 5808401
Alignment:
Q  49 tgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgt 102  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||||| |||||||||    
T  5808454 tgtgcaggggttggggttcgaaccccggattcctcacttctccacacataatgt 5808401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 36877070 - 36876999
Alignment:
Q  21 gctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctcca 92  Q
    ||||| |||||||||| ||  ||||| ||||||||||||||||||||||| ||| |||| | || |||||||    
T  36877070 gctcagttggtagctaacatggataatttgtgcaggggtcggggttcgaaccccggatttcccacttctcca 36876999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 47684587 - 47684493
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| ||||  |||||||  ||||| |||||||||||| |||||| ||| ||| |||| |  | ||||||||||||||||| |||| |||||    
T  47684587 tagctcagttgggggctaccaaggataatttgtgcaggggttggggtttgaaccccggatttcctacttctccatacataatgtgtgtgaatcta 47684493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 51829656 - 51829563
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    ||||||| |||||||||||||| ||| | ||||||||| |  || ||||||| ||||||||||||| ||||||| ||||||||| |||| |||||    
T  51829656 tagctcagttggtagctaccag-gatcatttgtgcaggagctggtgttcgaaccccagattcctcacttctccacacataatgtatgtgaatcta 51829563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 33439984 - 33440036
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaat 71  Q
    |||||||||||||||||| |||| |||| ||||| ||||||||||||| ||||    
T  33439984 tagctcacttggtagctatcagaaataatttgtgtaggggtcggggtttgaat 33440036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 55009530 - 55009618
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtg 107  Q
    ||||||| ||||||||||  || ||||| ||||| || |  ||||||||||| ||| |||| |||| ||||||||||||||||| ||||    
T  55009530 tagctcaattggtagctattagggataatttgtgtagagaccggggttcgaaccccggatttctcacttctccatacataatgtgtgtg 55009618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 9737676 - 9737625
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaa 70  Q
    ||||||| |||||||||||||||||||   |||||||||||| |||||||||    
T  9737676 tagctcagttggtagctaccagagatattatgtgcaggggtcagggttcgaa 9737625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 17002907 - 17002992
Alignment:
Q  19 tagctcacttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtg 107  Q
    ||||||| |||||||||||||| ||||| |||| ||||||  ||||||||||   | |||||| || ||||||| ||||||||| ||||    
T  17002907 tagctcagttggtagctaccagggataatttgtacaggggctggggttcgaa---cggattccccacttctccacacataatgtgtgtg 17002992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 38745377 - 38745299
Alignment:
Q  35 taccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatcta 113  Q
    |||||| ||||| |||||||||||||||| |||||| |||  ||||| || ||||||| ||| ||||| |||| |||||    
T  38745377 taccagggataatttgtgcaggggtcgggattcgaaccccgaattccccacttctccacacaaaatgtgtgtgaatcta 38745299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 8757366 - 8757279
Alignment:
Q  27 ttggtagctaccagagataagttgtgcaggggtcggggttcgaatcccagattcctcatttctccatacataatgtttgtgcatctaa 114  Q
    ||||||||||||||||| |   |||||||||| ||||||||||| ||  |||||| ||  |||||| ||||||||| |||| ||||||    
T  8757366 ttggtagctaccagagacattatgtgcaggggccggggttcgaaccctggattccccacgtctccacacataatgtgtgtgaatctaa 8757279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University