View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2706_low_3 (Length: 451)
Name: NF2706_low_3
Description: NF2706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2706_low_3 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 15190302 - 15190737
Alignment:
| Q |
1 |
ctttaaacggtctctttaccgtgcccttgcattctttccaccctttgctggtcgtctcgaaattacagaacacgaagataacactatctcgtgttccctt |
100 |
Q |
| |
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|||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15190302 |
ctttaaacagtctctttcctgtgcccttgcattctttccaccctttactggtcgtctcgaaattacagaacacgaagataacactatttcgtgttccctt |
15190401 |
T |
|
| Q |
101 |
gcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttccgttttccact |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15190402 |
gcatgcaaaaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttcctttttccact |
15190501 |
T |
|
| Q |
201 |
ccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggtacttttgttagttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15190502 |
ccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggtacttttgttagttg |
15190601 |
T |
|
| Q |
301 |
gacaatgaaccatgtagtccttgatggaatgtccaattcacatttcatcaattcacttgctgaaatctcacgtggttcttgccatcaaatatctttacct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15190602 |
gacaatgaaccatgtagtccttgatggaatgtccaattcacatttcatcaattcactggctgaaatctcacgtggttcttgccatcaaatatctgtacct |
15190701 |
T |
|
| Q |
401 |
ccaacacttgaacgtttatttccaaatggaattcaa |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15190702 |
ccaacacttgaacgtttatttccaaatggaattcaa |
15190737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 273
Target Start/End: Original strand, 15744112 - 15744361
Alignment:
| Q |
24 |
cccttgcattctttccaccctttgctggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcact |
123 |
Q |
| |
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|||||| ||| |||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||| | | |||||||||| ||||||||| |
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| T |
15744112 |
cccttgaattttttccaccctttactggtcgtctcaaaatcaaggaacacgaagataacactatctcgtgttccatcacgtgcaacaatgttggtgcact |
15744211 |
T |
|
| Q |
124 |
ctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttccgttttccactccttctttccacttaacggagtt |
223 |
Q |
| |
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||||||||||| |||||| || || |||| | ||||| | ||| |||| || | |||| || ||||||| || |||||| |||||||||| |
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| T |
15744212 |
atttgttcatgctgcagcagaaaataccagtgtcgatgacatcattggagccacgtatcatcctaaaattctccactcattttttccatttaacggagtg |
15744311 |
T |
|
| Q |
224 |
ataaactacgaaggtacatcacatccattgcttgcattccaagtaacaga |
273 |
Q |
| |
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| |||||||||||| |||||| ||||| |||||| | ||||||||||| |
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| T |
15744312 |
aaaaactacgaagggacatcaatgccattacttgcagtacaagtaacaga |
15744361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 34174908 - 34174836
Alignment:
| Q |
215 |
aacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggta |
287 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||||||||||| | |||||||||||||||| ||| |||| |
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| T |
34174908 |
aacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggta |
34174836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 11969718 - 11969636
Alignment:
| Q |
195 |
tccactccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagtta |
277 |
Q |
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||||||| || ||||||||||||||||||| |||||| ||||| |||||| | |||||||||||| ||||||||||||||||| |
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| T |
11969718 |
tccactcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagtta |
11969636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 8935268 - 8935396
Alignment:
| Q |
53 |
cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat |
152 |
Q |
| |
|
|||||| |||| || ||| || |||| || ||| ||||||| ||| || |||||||||||| |||| ||||||||| ||||| | | ||||||| || | |
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| T |
8935268 |
cgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcaggtgtactctttgtccatgccagatcagagaatactt |
8935367 |
T |
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| Q |
153 |
gtgttgccgacattctaggatccacctac |
181 |
Q |
| |
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| T |
8935368 |
gtgttgctgacattctagaacccacctac |
8935396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 181
Target Start/End: Original strand, 8934324 - 8934455
Alignment:
| Q |
50 |
ggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaaca |
149 |
Q |
| |
|
||||||||| |||| || ||| || |||| || ||| ||||||| ||| || |||||||||||| | || ||||||||| ||||| | | ||||||| | |
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| T |
8934324 |
ggtcgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcagatgtactctttgtccatgccagatcagagaata |
8934423 |
T |
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| Q |
150 |
catgtgttgccgacattctaggatccacctac |
181 |
Q |
| |
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| |||||||| |||||||||| | |||||||| |
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| T |
8934424 |
cttgtgttgctgacattctagaacccacctac |
8934455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 8929922 - 8930000
Alignment:
| Q |
103 |
atgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctac |
181 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| | | ||||||| || |||||||| |||||||||| | |||||||| |
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|
| T |
8929922 |
atgcaacaatgcagttgtactctttgttcatgccagatcagagaatacttgtgttgctgacattctagaacccacctac |
8930000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 7638019 - 7637891
Alignment:
| Q |
53 |
cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat |
152 |
Q |
| |
|
|||||| |||| || |||||| ||| |||||| | ||||||||| || |||||||||||| |||| ||||||||| ||||| ||||||||| || | |
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|
| T |
7638019 |
cgtctcaaaataacggaacacagagacaacactgtttcgtgttccgttatatgcaacaatgcaggtgtactctttgtccatgccgcagcagagaatactt |
7637920 |
T |
|
| Q |
153 |
gtgttgccgacattctaggatccacctac |
181 |
Q |
| |
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||||||| ||||| |||| | |||||||| |
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|
| T |
7637919 |
gtgttgcagacatcctagaacccacctac |
7637891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 436
Target Start/End: Complemental strand, 7629285 - 7629187
Alignment:
| Q |
341 |
catttcatcaattcacttgctgaaatctcacgtggttcttgccatca---aatatctttacctccaacacttgaacgtttatttccaaatggaattcaa |
436 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| ||| ||||| ||||||| |||||||||| |||||||| ||||||||||| |||||| |
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|
| T |
7629285 |
catttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaa |
7629187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 7399249 - 7399197
Alignment:
| Q |
226 |
aaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaa |
278 |
Q |
| |
|
|||||||||||| |||||||| ||| | |||||| | |||||||||||||||| |
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|
| T |
7399249 |
aaactacgaagggacatcacaaccactacttgcagtacaagtaacagagttaa |
7399197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 277
Target Start/End: Complemental strand, 8103428 - 8103204
Alignment:
| Q |
53 |
cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat |
152 |
Q |
| |
|
||||| ||||| ||||| || ||||| ||||| || |||||||| | | ||||||||||| |||| ||||||||| ||||| | | | |||||||| | |
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|
| T |
8103428 |
cgtctagaaataacagaccatgaagacaacaccatgtcgtgttcggtcacgtgcaacaatgccggtgtactctttgtccatgctacaactgagaacactt |
8103329 |
T |
|
| Q |
153 |
gtgttgccgacattctaggatccacctaccttccttccgttttccactccttctttccacttaacggagttataaactacgaaggtacatcacatccatt |
252 |
Q |
| |
|
|||| | ||||| || |||| |||||| ||||| || || || | || || | |||||| |||||| | | |||||||||||| |||||||| ||||| |
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|
| T |
8103328 |
gtgtaggtgacatacttggatgcacctatattcctcccattctcaattcattttatccactgaacggaatcaaaaactacgaaggcacatcacaaccatt |
8103229 |
T |
|
| Q |
253 |
gcttgcattccaagtaacagagtta |
277 |
Q |
| |
|
| |||| | ||||| ||||||||| |
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|
| T |
8103228 |
gtttgccgtgcaagtgacagagtta |
8103204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 5219 - 5160
Alignment:
| Q |
218 |
ggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagtta |
277 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||| |||||| |||||||||| |||||| |
|
|
| T |
5219 |
ggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaacggagtta |
5160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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