View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2706_low_4 (Length: 432)
Name: NF2706_low_4
Description: NF2706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2706_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 23 - 426
Target Start/End: Complemental strand, 47609447 - 47609044
Alignment:
| Q |
23 |
attttacttgtgatttataacctcatttattgaatttttgtttgataaattctctgtataattgagctttgggtcagttctattcaaaatgtgcttgcaa |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47609447 |
attttacttgtgatttataacctcatttattgaatttttgtttgataaattctctgtataattgagctttgggttagttctattcaaaatgtgcttgcaa |
47609348 |
T |
|
| Q |
123 |
tattatgtagttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgcgtgatatgctatttcttttagc |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47609347 |
tattatgtagttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgtgtgatatgctatttcttttagc |
47609248 |
T |
|
| Q |
223 |
aactgaccgaattattggcttgtttggttatgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatag |
322 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47609247 |
aactgaccgaattattggcttgtttggttatgcggcacttcaggaaaaatcacgttaaaaattcacatcaaagcaaaagcttgtatttgtagcttcatag |
47609148 |
T |
|
| Q |
323 |
tttccatgttgaaattacattgggacgtggtatttgtgtcttaaaatctaatccaaacactcactatatatctcttaatctcgttgtatgaaggcctttg |
422 |
Q |
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|||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47609147 |
tttccacattgaaattgcattgggacgtagtatttgtgtcttaaaatctaatccaaacactcactatatatctcttaatctcgttgtatgaaggcctatg |
47609048 |
T |
|
| Q |
423 |
ctac |
426 |
Q |
| |
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|||| |
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|
| T |
47609047 |
ctac |
47609044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 47604893 - 47604761
Alignment:
| Q |
79 |
tataattgagctttgggtcagttctattcaaaatgtgcttgcaatattatgtagttgcttatgatgaatttttgagttactagagagatgtttgacttag |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47604893 |
tataattgagctttgggtcagttctattcaaaatgtgcttgcaatattatttagttgcttatgatgaatttttgagttactagagagatgtttgacttag |
47604794 |
T |
|
| Q |
179 |
ttcttggttttgtttcctctgcgtgatatgcta |
211 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |
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| T |
47604793 |
ttcttggttttgtttcctctgtgttatatgcta |
47604761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 238 - 343
Target Start/End: Complemental strand, 19112684 - 19112579
Alignment:
| Q |
238 |
tggcttgtttggttatgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaat |
337 |
Q |
| |
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||||||| ||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||| |
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| T |
19112684 |
tggcttgcttggttatgcggcacatcaaggaaaatcacgttaaaaaatcacatcaaagcaaaagctcatatttgtagcttcataatttccaagttgaaat |
19112585 |
T |
|
| Q |
338 |
tacatt |
343 |
Q |
| |
|
| |||| |
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|
| T |
19112584 |
tgcatt |
19112579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 19991472 - 19991412
Alignment:
| Q |
133 |
ttgcttatgatgaatttttgagttactagagagatgtttgacttagttcttggttttgttt |
193 |
Q |
| |
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|||| ||| ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |
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| T |
19991472 |
ttgcatataatgaatttttgagttactagaaagatgcttgactttgttcttagttttgttt |
19991412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 250 - 387
Target Start/End: Original strand, 19155022 - 19155159
Alignment:
| Q |
250 |
ttatgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacg |
349 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||| || ||||| | |
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| T |
19155022 |
ttatgcgacatttcaagaaaaattacgttaaaaattcacatcaaagcaaaagcttataattatagcttcatagtttccacgttgaaattgcaatgggagg |
19155121 |
T |
|
| Q |
350 |
tggtatttgtgtcttaaaatctaatccaaacactcact |
387 |
Q |
| |
|
||||||||| ||| |||| || |||||||||| |||| |
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|
| T |
19155122 |
tggtatttgcgtcagaaaaactgatccaaacacccact |
19155159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 388
Target Start/End: Original strand, 36903636 - 36903756
Alignment:
| Q |
268 |
aaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtcttaaa |
367 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||| || ||||| |||||||| |||||||| || || ||| |
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| T |
36903636 |
aaaatcacgttagaaaatcacatcaaagcaaaagcttatatttgtagcttcataatttccaaattaaaattgcattgggaagtggtattcgtatcccaaa |
36903735 |
T |
|
| Q |
368 |
atctaatccaaacactcacta |
388 |
Q |
| |
|
| ||||| |||||||||||| |
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| T |
36903736 |
agttaatcgaaacactcacta |
36903756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 385
Target Start/End: Complemental strand, 20909287 - 20909175
Alignment:
| Q |
271 |
atcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtcttaaaatc |
370 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||| || ||| ||||| |||||| | |||||||||||||| ||| | |
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| T |
20909287 |
atcacgttaaaaaatcacatcaaaggaaaagcttatatttgtagc-tcataattt-caagttaaaattgcattggaaagtggtatttgtgtcgcaaaggc |
20909190 |
T |
|
| Q |
371 |
taatccaaacactca |
385 |
Q |
| |
|
| ||||||||||||| |
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|
| T |
20909189 |
tgatccaaacactca |
20909175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 240 - 386
Target Start/End: Original strand, 33765004 - 33765150
Alignment:
| Q |
240 |
gcttgtttggttatgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaatta |
339 |
Q |
| |
|
||||||||||||||| | || ||||| ||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |
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|
| T |
33765004 |
gcttgtttggttatgtggcaggtcaagtaaaattactttaaaaattcacatcaaagcaaaagctcagatttgtagcttcatagttttcacgttgaaattg |
33765103 |
T |
|
| Q |
340 |
cattgggacgtggtatttgtgtcttaaaatctaatccaaacactcac |
386 |
Q |
| |
|
||||||||||||||||| |||| |||| || |||||||| ||||| |
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|
| T |
33765104 |
tattgggacgtggtatttatgtcccaaaagctgatccaaacgctcac |
33765150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 13876788 - 13876882
Alignment:
| Q |
268 |
aaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttgaaattacattgggacgtggtatttgtgtc |
362 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||| |||||||| ||||||| |||||| || ||||| ||||| || |||||||||||||| |
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|
| T |
13876788 |
aaaatcacgttaaaaaatcatataaaagcaaaagcttatatttgtaacttcataatttccaaattaaaattgcattgagaagtggtatttgtgtc |
13876882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 4287778 - 4287698
Alignment:
| Q |
148 |
ttttgagttactagagagatgtttgacttagttcttggttttgtttcctctgcgtgatatgctatttcttttagcaactgacc |
230 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| || |||||| | | ||||||||||| ||||||||| ||||| |
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|
| T |
4287778 |
ttttgatttactagagagatgtttgactttgttcttgggttgttttccttt--ctcatatgctatttgttttagcaattgacc |
4287698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 11016928 - 11016847
Alignment:
| Q |
253 |
tgcgacacttcaagaaaaatcacgttaaaaattcacatcaaagcaaaagctcgtatttgtagcttcatagtttccatgttga |
334 |
Q |
| |
|
||||||| ||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||| ||| || ||||| |
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| T |
11016928 |
tgcgacatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagctaatatttgtagcttcataattttcaagttga |
11016847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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