View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2707_high_5 (Length: 363)
Name: NF2707_high_5
Description: NF2707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2707_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 52127354 - 52126999
Alignment:
| Q |
6 |
gaagaaagccagatatcttcataggtgagtctgagacgagaaggagtgatagcgtaggatttggtgagacctggtaagaccggaacgtaaacaagcttct |
105 |
Q |
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| T |
52127354 |
gaagaaagccagatatcttcataggtgagtctgagacgagaaggagtgatagcgtaggatttggtgagacctggtaagaccggaacgtaaacaagcttct |
52127255 |
T |
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| Q |
106 |
cctgaaacgcgacgagcaatgccatgccggcgacgactaagcctccgacgccgtagagtagaatgttcatgtacgaaaccatttgtttgtgcagagattc |
205 |
Q |
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| T |
52127254 |
cctgaaacgcgacgagcaatgccatgccggcgacgactaagcctccgacgccgtagagtagaatgttcatgtacgaaaccatttgtttgtgcagagattc |
52127155 |
T |
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| Q |
206 |
gaagaagaattaagcgcgtttgaattaagcggaaattgaaatgaattggagggtttcttgggaaacaccgaaataatgagattgtttcatgaatacgaat |
305 |
Q |
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| T |
52127154 |
gaagaagaattaagcgcgtttggattaagcggaaattgaaatgaattggagggtttcttgggaaacaccgaaataatgagattgtttcatgaatacgaat |
52127055 |
T |
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| Q |
306 |
cgggtgagattatagtaccaaaagtcaagatgtgggactggctctgtggtgctgct |
361 |
Q |
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| T |
52127054 |
cgggtgagattatagtaccaaaagtcaagatgtgggactggctgtgttgtgttgct |
52126999 |
T |
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