View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2707_high_9 (Length: 329)

Name: NF2707_high_9
Description: NF2707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2707_high_9
NF2707_high_9
[»] scaffold0796 (2 HSPs)
scaffold0796 (2-318)||(1656-1972)
scaffold0796 (2-318)||(5679-5995)
[»] chr3 (20 HSPs)
chr3 (1-319)||(24933753-24934069)
chr3 (7-247)||(41455092-41455332)
chr3 (1-242)||(10389443-10389686)
chr3 (1-242)||(10414532-10414775)
chr3 (1-242)||(10421202-10421445)
chr3 (67-239)||(20247791-20247966)
chr3 (57-241)||(9534196-9534382)
chr3 (67-241)||(14762758-14762935)
chr3 (67-239)||(38310802-38310977)
chr3 (54-239)||(24192820-24193009)
chr3 (57-242)||(23370505-23370693)
chr3 (190-304)||(13302180-13302292)
chr3 (178-247)||(16801462-16801531)
chr3 (160-241)||(17240513-17240595)
chr3 (190-304)||(13312836-13312948)
chr3 (190-304)||(13323727-13323839)
chr3 (190-241)||(18929249-18929300)
chr3 (190-242)||(12033444-12033496)
chr3 (190-242)||(17131735-17131787)
chr3 (190-242)||(51301592-51301644)
[»] chr7 (22 HSPs)
chr7 (1-247)||(12590638-12590884)
chr7 (7-247)||(13007253-13007492)
chr7 (67-246)||(18873238-18873420)
chr7 (133-247)||(12709838-12709952)
chr7 (133-247)||(13122909-13123023)
chr7 (133-247)||(13743655-13743769)
chr7 (67-241)||(15168053-15168230)
chr7 (67-245)||(14422862-14423043)
chr7 (57-241)||(16009445-16009631)
chr7 (67-237)||(10895795-10895968)
chr7 (133-239)||(16677239-16677348)
chr7 (133-239)||(17651475-17651584)
chr7 (190-241)||(11382871-11382922)
chr7 (190-241)||(11389348-11389399)
chr7 (190-247)||(21230954-21231011)
chr7 (190-242)||(20311051-20311103)
chr7 (133-241)||(13679438-13679548)
chr7 (206-247)||(831628-831669)
chr7 (206-247)||(1196808-1196849)
chr7 (206-247)||(34958578-34958619)
chr7 (190-242)||(2971257-2971309)
chr7 (190-242)||(20906461-20906513)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-247)||(45269-45516)
[»] chr6 (22 HSPs)
chr6 (1-242)||(34639986-34640228)
chr6 (1-324)||(25469625-25469943)
chr6 (1-242)||(34646660-34646902)
chr6 (7-247)||(12168184-12168423)
chr6 (7-247)||(19287093-19287332)
chr6 (7-247)||(19878277-19878516)
chr6 (7-247)||(19785864-19786103)
chr6 (7-247)||(19884053-19884292)
chr6 (67-241)||(23057816-23057993)
chr6 (124-247)||(930090-930214)
chr6 (106-247)||(18800354-18800498)
chr6 (57-241)||(23839066-23839253)
chr6 (54-247)||(29614141-29614337)
chr6 (57-242)||(10986180-10986368)
chr6 (226-318)||(14581076-14581167)
chr6 (124-241)||(4477793-4477912)
chr6 (190-247)||(24512838-24512895)
chr6 (190-241)||(9187499-9187550)
chr6 (190-241)||(25348491-25348542)
chr6 (190-239)||(25598648-25598697)
chr6 (190-242)||(20007946-20007998)
chr6 (171-242)||(31252406-31252478)
[»] chr4 (8 HSPs)
chr4 (7-242)||(53483524-53483760)
chr4 (54-247)||(8045827-8046022)
chr4 (162-247)||(11848088-11848174)
chr4 (190-242)||(15408143-15408195)
chr4 (190-241)||(8834900-8834951)
chr4 (190-241)||(13888646-13888697)
chr4 (190-239)||(14486664-14486713)
chr4 (206-247)||(15747551-15747592)
[»] chr5 (11 HSPs)
chr5 (7-246)||(23528451-23528690)
chr5 (57-247)||(38144531-38144723)
chr5 (67-246)||(22751019-22751201)
chr5 (124-241)||(28370055-28370173)
chr5 (124-241)||(19512322-19512441)
chr5 (160-241)||(18407944-18408026)
chr5 (160-241)||(23111200-23111282)
chr5 (190-242)||(22438747-22438799)
chr5 (190-242)||(19236903-19236955)
chr5 (190-242)||(22461159-22461211)
chr5 (190-242)||(22467783-22467835)
[»] chr2 (10 HSPs)
chr2 (7-242)||(5706023-5706258)
chr2 (124-247)||(26583764-26583887)
chr2 (124-241)||(6483654-6483772)
chr2 (124-241)||(6487121-6487239)
chr2 (67-241)||(19661454-19661630)
chr2 (160-241)||(23265115-23265197)
chr2 (160-241)||(23280183-23280265)
chr2 (190-241)||(21908363-21908414)
chr2 (190-242)||(10580-10632)
chr2 (190-242)||(25180929-25180981)
[»] chr8 (12 HSPs)
chr8 (7-247)||(17054412-17054651)
chr8 (133-247)||(23866561-23866675)
chr8 (124-242)||(44477559-44477678)
chr8 (124-242)||(44492717-44492836)
chr8 (57-239)||(8727735-8727920)
chr8 (160-241)||(23482053-23482135)
chr8 (133-241)||(18614217-18614327)
chr8 (190-255)||(25111980-25112045)
chr8 (190-241)||(29643386-29643437)
chr8 (190-241)||(39364924-39364975)
chr8 (190-247)||(14056558-14056615)
chr8 (190-242)||(24320670-24320722)
[»] chr1 (13 HSPs)
chr1 (7-247)||(41111856-41112095)
chr1 (57-241)||(20437024-20437211)
chr1 (190-318)||(20044876-20045003)
chr1 (160-241)||(32651545-32651627)
chr1 (175-241)||(18712787-18712854)
chr1 (190-241)||(19663517-19663568)
chr1 (190-241)||(11158097-11158148)
chr1 (190-241)||(20805325-20805376)
chr1 (190-239)||(10811785-10811834)
chr1 (190-242)||(20851132-20851184)
chr1 (190-242)||(20857759-20857811)
chr1 (190-242)||(21706279-21706331)
chr1 (190-242)||(21710821-21710873)
[»] scaffold0117 (2 HSPs)
scaffold0117 (54-247)||(1892-2087)
scaffold0117 (54-247)||(8569-8764)
[»] scaffold0026 (2 HSPs)
scaffold0026 (54-247)||(11845-12041)
scaffold0026 (57-242)||(111554-111741)
[»] scaffold0058 (1 HSPs)
scaffold0058 (99-247)||(202-351)
[»] scaffold1773 (1 HSPs)
scaffold1773 (67-247)||(1056-1238)
[»] scaffold0006 (1 HSPs)
scaffold0006 (67-247)||(50057-50239)
[»] scaffold0029 (3 HSPs)
scaffold0029 (67-247)||(111759-111943)
scaffold0029 (190-242)||(91202-91254)
scaffold0029 (190-242)||(96928-96980)
[»] scaffold0247 (1 HSPs)
scaffold0247 (54-247)||(11206-11402)
[»] scaffold0384 (1 HSPs)
scaffold0384 (190-318)||(15989-16116)
[»] scaffold0154 (1 HSPs)
scaffold0154 (124-247)||(30793-30918)
[»] scaffold0025 (1 HSPs)
scaffold0025 (54-239)||(14398-14587)
[»] scaffold0924 (1 HSPs)
scaffold0924 (124-247)||(745-870)
[»] scaffold0553 (2 HSPs)
scaffold0553 (57-242)||(10195-10383)
scaffold0553 (229-318)||(11008-11096)
[»] scaffold0544 (1 HSPs)
scaffold0544 (57-242)||(1525-1713)
[»] scaffold0456 (2 HSPs)
scaffold0456 (156-246)||(900-991)
scaffold0456 (156-246)||(8045-8136)
[»] scaffold0090 (1 HSPs)
scaffold0090 (178-247)||(18160-18230)
[»] scaffold0222 (1 HSPs)
scaffold0222 (160-241)||(16793-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (160-241)||(116869-116951)
[»] scaffold0461 (1 HSPs)
scaffold0461 (160-241)||(8-90)
[»] scaffold0146 (1 HSPs)
scaffold0146 (160-241)||(13605-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (160-241)||(101928-102010)
[»] scaffold0107 (1 HSPs)
scaffold0107 (190-247)||(40526-40583)
[»] scaffold0310 (1 HSPs)
scaffold0310 (190-242)||(17647-17699)
[»] scaffold0019 (1 HSPs)
scaffold0019 (190-242)||(135477-135529)
[»] scaffold0235 (1 HSPs)
scaffold0235 (190-240)||(22594-22644)
[»] scaffold0815 (1 HSPs)
scaffold0815 (187-256)||(1450-1519)
[»] scaffold0348 (1 HSPs)
scaffold0348 (190-318)||(9339-9467)
[»] scaffold0124 (1 HSPs)
scaffold0124 (190-241)||(34276-34327)
[»] scaffold0139 (1 HSPs)
scaffold0139 (190-241)||(14997-15048)
[»] scaffold0138 (1 HSPs)
scaffold0138 (190-241)||(12301-12352)
[»] scaffold2054 (1 HSPs)
scaffold2054 (160-247)||(686-775)
[»] scaffold0317 (1 HSPs)
scaffold0317 (133-241)||(1331-1441)
[»] scaffold0609 (1 HSPs)
scaffold0609 (171-242)||(5857-5929)
[»] scaffold0249 (1 HSPs)
scaffold0249 (169-242)||(13894-13969)
[»] scaffold0131 (1 HSPs)
scaffold0131 (190-242)||(1000-1052)
[»] scaffold0127 (1 HSPs)
scaffold0127 (190-242)||(10242-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (190-242)||(135441-135493)
[»] scaffold0001 (1 HSPs)
scaffold0001 (190-242)||(493028-493079)


Alignment Details
Target: scaffold0796 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 1972 - 1656
Alignment:
Q  2 aataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgaga 101  Q
    |||| ||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1972 aatattcatcaattcatacaattcatcacaaattcaatcagttaatggattgcagcaacagcatggattaagctttcattcttaacattaaattccgaga 1873  T
Q  102 aaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaatta 201  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1872 aaactaacatcatccttactcattccatcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaatttcaggaatta 1773  T
Q  202 tagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttcccccttgttcttgg 301  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1772 tagattatgattattgagagatagtctcacccttaccttagttttgtaggaagaattaacacagcaaatcagctcctaagtttttcccccttgttcttgg 1673  T
Q  302 tttctcttgctttctct 318  Q
    |||||||||||||||||    
T  1672 tttctcttgctttctct 1656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 5995 - 5679
Alignment:
Q  2 aataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgaga 101  Q
    |||| ||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5995 aatattcatcaattcatacaattcatcacaaattcaatcagttaatggattgcagcaacagcatggattaagctttcattcttaacattaaattccgaga 5896  T
Q  102 aaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaatta 201  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5895 aaactaacatcatccttactcattccatcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaatttcaggaatta 5796  T
Q  202 tagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttcccccttgttcttgg 301  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5795 tagattatgattattgagagatagtctcacccttaccttagttttgtaggaagaattaacacagcaaatcagctcctaagtttttcccccttgttcttgg 5696  T
Q  302 tttctcttgctttctct 318  Q
    |||||||||||||||||    
T  5695 tttctcttgctttctct 5679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 24934069 - 24933753
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24934069 aaatattcatcaattcatacaatacatcaaaaattcaatcaattaatggattgcagcaacaacatggattaagctttcattcttaacattaaattccgag 24933970  T
Q  101 aaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaatt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24933969 aaaactaacatcatctttactcattccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaatt 24933870  T
Q  201 atagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttcccccttgttcttg 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||  |||||||||||||    
T  24933869 atagattatgattattgagagatagtctcacccttaccttagaattgtaggaagaattaacaccgcaaatcagctcctaagtttt--ccccttgttcttg 24933772  T
Q  301 gtttctcttgctttctctg 319  Q
    |||||||||||||||||||    
T  24933771 gtttctcttgctttctctg 24933753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 41455332 - 41455092
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||| ||| ||||| ||||||||||||||   |||||| |||||||   |||||||||| |||||||||| |||||||||| | ||||||||    
T  41455332 tcatcaattcattcaaatcatccaaaattcaatcaattcatggattacagcaaccatatggattaagatttcattcttgacattaaatttcaagaaaact 41455233  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  41455232 aacatcatctttactcattccatcagaatcatcatcaatccctaattttcatcctattttccaaaactattcaattaggtcaatttcagaaattatagat 41455133  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  41455132 tatgattattgagagatagtctcacccttaccttagttttg 41455092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10389686 - 10389443
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  10389686 aaatattcatcaattcatacaattcatcaaaaattcaatcaattaatggattgcagcaacaacatgggttaagctttcattcttaacgttaaattccgag 10389587  T
Q  101 -aaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtca-atttcagaaa 198  Q
     |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| | |  |||||||||    
T  10389586 aaaaactaacatcatctttacccattccatcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaa 10389487  T
Q  199 ttatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||||| ||||| || ||||| ||||  || ||||||||||||||    
T  10389486 ttatacattataatcattgaaagataatcccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10414775 - 10414532
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    ||||| |||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  10414775 aaatattcatcaattcatacaattcatccaaaattcaatcaattaatggattgcagcaacaacatgggttaagctttcattcttaacgttaaattccgag 10414676  T
Q  101 -aaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtca-atttcagaaa 198  Q
     |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| | |  |||||||||    
T  10414675 aaaaactaacatcatctttacccattccatcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaa 10414576  T
Q  199 ttatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||||| ||||| || ||||| ||||  || ||||||||||||||    
T  10414575 ttatacattataatcattgaaagataatcccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10421445 - 10421202
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    ||||| |||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  10421445 aaatattcatcaattcatacaattcatccaaaattcaatcaattaatggattgcagcaacaacatgggttaagctttcattcttaacgttaaattccgag 10421346  T
Q  101 -aaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtca-atttcagaaa 198  Q
     |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| | |  |||||||||    
T  10421345 aaaaactaacatcatctttacccattccatcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaa 10421246  T
Q  199 ttatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||||| ||||| || ||||| ||||  || ||||||||||||||    
T  10421245 ttatacattataatcattgaaagataatcccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 20247966 - 20247791
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | |||||| |||||| ||| |||| |||  ||| |||||||||||||||||||||||   |||  ||||     
T  20247966 gattaagttttcattctgaacattatattacaagaaaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 20247867  T
Q  165 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacct 239  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  20247866 ttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 9534196 - 9534382
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcatccca-tcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||   |    
T  9534196 caacagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattccactcagaatcatcatcaaaccctaaccct 9534295  T
Q  156 catattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    ||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9534296 caatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 14762935 - 14762758
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| |||||||||||||||||||||||   |||  ||||     
T  14762935 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 14762836  T
Q  165 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  14762835 ttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 38310977 - 38310802
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| |||||||||||||||||||||||   |||  ||||     
T  38310977 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 38310878  T
Q  165 ttccaaaactattcaattaggtcaat-ttcagaaattatagattatgattattgagagatggtctcacccttacct 239  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  38310877 ttccaaaactatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 239
Target Start/End: Original strand, 24192820 - 24193009
Alignment:
Q  54 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaa 151  Q
    |||||||||||| ||||||| ||||||||| ||||| | ||| | | | || |||||| ||| |||| |||  ||| |||||||||||||||||||||||    
T  24192820 cagcaacagcatagattaagttttcattctgaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaa 24192919  T
Q  152 ttttcatattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacct 239  Q
       |||  |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  24192920 ccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 242
Target Start/End: Complemental strand, 23370693 - 23370505
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||        
T  23370693 caacagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccca 23370594  T
Q  156 catattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||  |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  23370593 caatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 13302292 - 13302180
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttccc 289  Q
    |||||||||||| | |||||||||||||| ||||  |||||||||||||||||  |||||| || ||  ||||||||||| ||| ||||| |||  || |    
T  13302292 tttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattgtagaaaaaa--aacacagcaaatcagttcctaggttcatctc 13302195  T
Q  290 ccttgttcttggttt 304  Q
    |||||||||||||||    
T  13302194 ccttgttcttggttt 13302180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 16801531 - 16801462
Alignment:
Q  178 caattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||| |||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  16801531 caatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttaccttagttttg 16801462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 17240595 - 17240513
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||  |||| |||||||||||||| |||||||||||||||||    
T  17240595 ttattttcaagaacaattcaattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 13312948 - 13312836
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttccc 289  Q
    ||||| |||||| | |||||||||||||| ||||  |||||||||||||||||  |||||| || ||  ||||||||||| ||| ||||| |||  || |    
T  13312948 tttcaaaaattacatattatgattattgaaagataatctcacccttaccttagaattgtagaaaaaa--aacacagcaaatcagttcctaggttcatctc 13312851  T
Q  290 ccttgttcttggttt 304  Q
    |||||||||||||||    
T  13312850 ccttgttcttggttt 13312836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 13323839 - 13323727
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttccc 289  Q
    |||||||||||| | |||||||||||||| ||||  |||||||||||||||||  |||||| || ||  ||  ||||||| ||| ||||| ||| ||| |    
T  13323839 tttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattgtagaaaaaa--aaatcagcaaatcagttcctaggttcttctc 13323742  T
Q  290 ccttgttcttggttt 304  Q
    |||||||||||||||    
T  13323741 ccttgttcttggttt 13323727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 18929249 - 18929300
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  18929249 tttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 12033496 - 12033444
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  12033496 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 17131735 - 17131787
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  17131735 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 51301592 - 51301644
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||| | |||||||||||||  ||||  |||||||||||||||||    
T  51301592 tttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 12590884 - 12590638
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    ||||| ||||||||  |||||||||||| |||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||| ||    
T  12590884 aaatattcatcaataaatacaattcatccaaaattcaatcaattaatggattacagcaacaacatggattaagctttcattcttaacattaaattccaag 12590785  T
Q  101 aaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaatt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12590784 aaaactaacatcatctttactcattccatcagaatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaatttcagaaatt 12590685  T
Q  201 atagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  12590684 atagattatgattattgagagatagtctcacccttaccttagttttg 12590638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 13007253 - 13007492
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| ||||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||    
T  13007253 tcatcaattcatacaattcatccaaaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaa-ct 13007351  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13007352 aacatcatctttactcattccatcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaatttcagaaattatagat 13007451  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  13007452 tatgattattgagagatagtctcacccttaccttagttttg 13007492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 246
Target Start/End: Original strand, 18873238 - 18873420
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| |||||||||||||||||||||||   |||  ||||     
T  18873238 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 18873337  T
Q  165 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagtttt 246  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  18873338 ttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 12709952 - 12709838
Alignment:
Q  133 aatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagattatgattattgagagatggtctcacc 232  Q
    |||||||||||||||||||   |||  ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  12709952 aatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatttcaggaattataaattatgattattgagagatagtctcacc 12709853  T
Q  233 cttaccttagttttg 247  Q
    |||||||||||||||    
T  12709852 cttaccttagttttg 12709838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 13123023 - 13122909
Alignment:
Q  133 aatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagattatgattattgagagatggtctcacc 232  Q
    |||||||||||||||||||   |||  ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  13123023 aatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatttcaggaattataaattatgattattgagagatagtctcacc 13122924  T
Q  233 cttaccttagttttg 247  Q
    |||||||||||||||    
T  13122923 cttaccttagttttg 13122909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 13743655 - 13743769
Alignment:
Q  133 aatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagattatgattattgagagatggtctcacc 232  Q
    |||||||||||||||||||   |||  ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  13743655 aatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatttcaggaattataaattatgattattgagagatagtctcacc 13743754  T
Q  233 cttaccttagttttg 247  Q
    |||||||||||||||    
T  13743755 cttaccttagttttg 13743769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 15168053 - 15168230
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| |||||||||||||||||||||||   |||  ||||     
T  15168053 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 15168152  T
Q  165 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  15168153 ttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 14422862 - 14423043
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaattttcatattattt 165  Q
    ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||   |||  |||| |    
T  14422862 gattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatct 14422961  T
Q  166 tccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagttt 245  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14422962 tccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 16009445 - 16009631
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| ||||||||||||||||||| |||        
T  16009445 caacagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccttaaccca 16009544  T
Q  156 catattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    ||  |||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16009545 caatttatcttccaaaaccatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 237
Target Start/End: Complemental strand, 10895968 - 10895795
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaattttcatattattt 165  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| |||  ||| ||| ||| |||||||||||||||||||||||    ||  |||| |    
T  10895968 gattaagttttcattctgaacattatattacaagagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaatttatct 10895869  T
Q  166 tccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttac 237  Q
    ||||||| |||| ||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||    
T  10895868 tccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 16677239 - 16677348
Alignment:
Q  133 aatcatcatcaaaccctaa-ttttcatattattttcc-aaaactattcaattaggtcaa-tttcagaaattatagattatgattattgagagatggtctc 229  Q
    |||||||||||||||||||   || || |||| |||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||||    
T  16677239 aatcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctc 16677338  T
Q  230 acccttacct 239  Q
    ||||||||||    
T  16677339 acccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 17651475 - 17651584
Alignment:
Q  133 aatcatcatcaaaccctaa-ttttcatattattttcc-aaaactattcaattaggtcaa-tttcagaaattatagattatgattattgagagatggtctc 229  Q
    |||||||||||||||||||   || || |||| |||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||||    
T  17651475 aatcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctc 17651574  T
Q  230 acccttacct 239  Q
    ||||||||||    
T  17651575 acccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 11382922 - 11382871
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  11382922 tttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 11389399 - 11389348
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  11389399 tttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 21231011 - 21230954
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||    
T  21231011 tttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttg 21230954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 20311103 - 20311051
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  20311103 tttcagaaattatacgttatgattattgagagatagtctcacccttaccttag 20311051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 13679438 - 13679548
Alignment:
Q  133 aatcatcatcaaaccctaattttca-tattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctca 230  Q
    ||||| ||||||||||||||| ||| | ||||  || | ||| ||| |||||| ||||||| || |||||||| || ||||| ||||| |||| ||||||    
T  13679438 aatcagcatcaaaccctaattctcagttttatcatcaagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctca 13679537  T
Q  231 cccttacctta 241  Q
    |||||||||||    
T  13679538 cccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  206 ttatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||| ||||||||||| | |||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  206 ttatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||| ||||||||||| | |||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  206 ttatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||| ||||||||||| | |||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 2971257 - 2971309
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  2971257 tttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 20906513 - 20906461
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  20906513 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 45516 - 45269
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||  |||||||| |||    
T  45516 aaataatcatcaattcatacaattcatcaaaaattcaatctatgaatggattgcagcaacaacatggattaagctttcattcttaatgttaaattcagag 45417  T
Q  101 aaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatatta-ttttccaaaactattcaattaggtcaatttcagaaat 199  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
T  45416 aaaactaacatcgtctttactcattccattagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaatttcaggaat 45317  T
Q  200 tatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  45316 tatagattatgattattgagagatagtctcacccttaccttagatttg 45269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34640228 - 34639986
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||| ||||||||||||| |||||||| |||    
T  34640228 aaataatcatcaattcatacaattcatcaaaaattcagtcaataagtggattgcggcaacaacatggattaagttttcattcttaacgttaaattcagag 34640129  T
Q  101 aaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaa-tttcagaaat 199  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  34640128 aaaactaacatcatctttactcattccatcagaaccatcatcaaaccctaattttcttattattttccaaaactattcaattaggtcaattttcagaaat 34640029  T
Q  200 tatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  34640028 tatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 25469943 - 25469625
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||| | | |||||     
T  25469943 aaatattcatcaattcatacaattcatcaaacattcaatcaattaatggattgcagcaacaacatggattaagctttcattcttaacatcagactccgat 25469844  T
Q  101 aaaactaacatcatcttt-actcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaat 199  Q
    ||  |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  25469843 aa--ctaacatcatcttttactcattccatcagaattatcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaatttcag-aat 25469747  T
Q  200 tatagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttcccccttgttctt 299  Q
    |||||||||||||||||||||||| ||||||||||||||||||  ||||| |||| ||||||||||| || | ||||||||||||   ||||||||||||    
T  25469746 tatagattatgattattgagagatagtctcacccttaccttag-attgtaagaaggattaacacagc-aatcggctcctaagttt---ccccttgttctt 25469652  T
Q  300 gg--tttctcttgctttctctgcttct 324  Q
    ||  |||||||||||||||||| ||||    
T  25469651 ggtttttctcttgctttctctggttct 25469625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34646902 - 34646660
Alignment:
Q  1 aaataatcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||| ||||||||||||| |||||||| |||    
T  34646902 aaataatcatcaattcatacaattcatcaaaaattcagtcaataagtggattgcggcaacaacatggattaagttttcattcttaacgttaaattcagag 34646803  T
Q  101 aaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaa-tttcagaaat 199  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||    
T  34646802 aaaactaacatcatctttactcattccatcagaaccatcatcaaaccctaattttcttattattttccaaaattattcaattaggtcaattttcagaaat 34646703  T
Q  200 tatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  34646702 tatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 12168184 - 12168423
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| ||||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||    
T  12168184 tcatcaattcatacaattcatccaaaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaa-ct 12168282  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12168283 aacatcatctttactcattccatcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaatttcagaaattatagat 12168382  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  12168383 tatgattattgagagatagtctcacccttaccttagttttg 12168423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 19287093 - 19287332
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| ||||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||    
T  19287093 tcatcaattcatacaattcatccaaaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaa-ct 19287191  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19287192 aacatcatctttactcattccatcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaatttcagaaattatagat 19287291  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  19287292 tatgattattgagagatagtctcacccttaccttagttttg 19287332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 19878277 - 19878516
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| ||||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||    
T  19878277 tcatcaattcatacaattcatccaaaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaa-ct 19878375  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19878376 aacatcatctttactcattccatcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaatttcagaaattatagat 19878475  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  19878476 tatgattattgagagatagtctcacccttaccttagttttg 19878516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 19786103 - 19785864
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| ||||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||    
T  19786103 tcatcaattcatacaattcatccaaaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaa-ct 19786005  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  19786004 aacatcatctttactcattccatcagaatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaatttcagaaattatagat 19785905  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  19785904 tatgattattgagagatagtctcacccttaccttagttttg 19785864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 19884053 - 19884292
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| ||||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||    
T  19884053 tcatcaattcatacaattcatccaaaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaa-ct 19884151  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19884152 aacatcatctttactcattccatcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaatttcagaaattatagat 19884251  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  19884252 tatgattattgagagatagtctcaccctaaccttagttttg 19884292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 23057816 - 23057993
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| |||||||||||||||||||||||   |||  ||||     
T  23057816 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 23057915  T
Q  165 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  23057916 ttccaaaactatgcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 930214 - 930090
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagaga 222  Q
    |||| |||||| ||||||||||||||||   |||  ||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||    
T  930214 tcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagattatgattattgagaga 930115  T
Q  223 tggtctcacccttaccttagttttg 247  Q
    | |||||||||||||||||||||||    
T  930114 tagtctcacccttaccttagttttg 930090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 106 - 247
Target Start/End: Original strand, 18800354 - 18800498
Alignment:
Q  106 taacatcatctttactcatcccatc-agaatcatcatcaaaccctaattttcatat-tattttccaaaactattcaattaggtcaattt-cagaaattat 202  Q
    |||||| ||| |||||||| || || |||||||||||||||||||||   |||  | |||||||||||||||  ||||||||||||||| ||||||||||    
T  18800354 taacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaattat 18800453  T
Q  203 agattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||    
T  18800454 agattatgattattgagagatagtctcacccttacattagttttg 18800498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 23839066 - 23839253
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| | |||||||||||||||||||||   |    
T  23839066 caacagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccattccccttagaatcatcatcaaaccctaaccct 23839165  T
Q  156 catattattttccaaa-actattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    ||  |||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23839166 caatttatcttccaaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 29614337 - 29614141
Alignment:
Q  54 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaa 151  Q
    |||||||| ||  ||||||| ||||||||| |||||| ||| |  ||| || |||||| ||| |||| |||  ||| ||| |||||||||||||||||||    
T  29614337 cagcaacaacaaagattaagttttcattctaaacattcaataca-agagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaa 29614239  T
Q  152 ttttcatatta-ttttccaaaactattcaattaggtcaa-tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
       |||  ||| |||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29614238 ccctcaatttatttttccaaaattatgcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 29614141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 242
Target Start/End: Complemental strand, 10986368 - 10986180
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||   |    
T  10986368 caacagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccct 10986269  T
Q  156 catattattttccaaaa-ctattcaattaggtcaatttc-agaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||  |||| |||||||| |||| |||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  10986268 caatttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttag 10986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 14581167 - 14581076
Alignment:
Q  226 tctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttcccccttgttcttggtttctcttgctttctct 318  Q
    |||||||||||||||||  ||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  14581167 tctcacccttaccttagaattgcaggaagaattaacacagcaaaacagctcctaag-ttttcccccttgttattggtttctcttgctttctct 14581076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 4477793 - 4477912
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagag 221  Q
    |||| |||||||||||||||||||||||    ||  |||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  4477793 tcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagag 4477892  T
Q  222 atggtctcacccttacctta 241  Q
    || |||||||||||||||||    
T  4477893 atagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 24512895 - 24512838
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||||||||| | ||||||||||||||||| |||||||||| ||||||| ||||    
T  24512895 tttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttg 24512838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 9187499 - 9187550
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||  |||| |||||||||||||| |||||||||||||||||    
T  9187499 tttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 25348491 - 25348542
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    ||||||||||| || | ||| ||||||||||||| |||||||||||||||||    
T  25348491 tttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 25598648 - 25598697
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacct 239  Q
    ||||||||| |||| |||||||| |||||||| | |||||||||||||||    
T  25598648 tttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 20007998 - 20007946
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||||| |||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20007998 tttcataaattatatattatgactattgaaagatgatcccacccttaccttag 20007946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 31252406 - 31252478
Alignment:
Q  171 aactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| | ||||| ||||||||||| ||||| || ||| | ||||  |||||||||||||||||    
T  31252406 aactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 53483524 - 53483760
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||| ||||||||||||| |||||||| |||||||||    
T  53483524 tcatcaattcatacaattcatcaaaaattcagtcaataagtggattgcggcaacaacatggattaagttttcattcttaacgttaaattcagagaaaact 53483623  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatatta-ttttccaaaactattcaattaggtcaatttcagaaattataga 205  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  53483624 aacatcatctttactcattccatcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaatttcaggaattataga 53483723  T
Q  206 ttatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||||||| ||||||||||||||||||    
T  53483724 ttatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 8046022 - 8045827
Alignment:
Q  54 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaa 151  Q
    |||||||| || |||||||| ||||||||| ||||||| ||| | ||| || |||||| |||||||| |||  ||| |||||||  || |||||||||||    
T  8046022 cagcaacaacaaggattaagttttcattctgaacattatattacaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaa 8045923  T
Q  152 ttttcatattattttccaaaactattcaattaggtcaatttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
       |||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  8045922 ccctcaatttattttccaaaactatgcaattaggtcaatttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 8045827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 11848088 - 11848174
Alignment:
Q  162 attttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||| ||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11848088 atttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 11848174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 15408143 - 15408195
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  15408143 tttcagaaattatatactatgattattgagagatagtctcacccttaccttag 15408195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 8834900 - 8834951
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| |||||||| |||||||| | | |||||||||||||||    
T  8834900 tttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 13888646 - 13888697
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| |||||||| |||||||| | | |||||||||||||||    
T  13888646 tttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 14486664 - 14486713
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacct 239  Q
    |||||||||||||| |||||||| |||||  ||| |||||||||||||||    
T  14486664 tttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  206 ttatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||| ||||||||||| | |||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 23528451 - 23528690
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| ||||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||||||    
T  23528451 tcatcaattcatacaattcatccaaaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaaact 23528550  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23528551 aacatcatccttactcattccatcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaatttcagaaattatagat 23528650  T
Q  207 tatgattattgagagatggtctcacccttaccttagtttt 246  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  23528651 tatgattattgagagatagtctcacccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 247
Target Start/End: Complemental strand, 38144723 - 38144531
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||   |    
T  38144723 caacagtatagattaagttttcattctaaacattacattacaatagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccct 38144624  T
Q  156 catattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||  ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38144623 caatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 38144531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 246
Target Start/End: Original strand, 22751019 - 22751201
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| |||||||||||||||||||||||   |||  ||||     
T  22751019 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 22751118  T
Q  165 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagtttt 246  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  22751119 ttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 28370173 - 28370055
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagaga 222  Q
    |||| ||| |||||||||||||||||||   |||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  28370173 tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagaga 28370074  T
Q  223 tggtctcacccttacctta 241  Q
    | |||||||||||||||||    
T  28370073 tagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 19512322 - 19512441
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagag 221  Q
    |||| ||| |||||||||||||||||||   |||  |||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  19512322 tcccctcaaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagag 19512421  T
Q  222 atggtctcacccttacctta 241  Q
    || |||||||||||||||||    
T  19512422 atagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 18408026 - 18407944
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  18408026 ttattttcaagaacaattcaattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 23111282 - 23111200
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  23111282 ttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 22438799 - 22438747
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  22438799 tttcagaaattatacattatgattattgagagatagtctcacccttaccttag 22438747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 19236903 - 19236955
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  19236903 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 22461159 - 22461211
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  22461159 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 22467783 - 22467835
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  22467783 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 5706258 - 5706023
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||| |||||    
T  5706258 tcatcaattcatacaattcatcaaaatttcaatcaattaatggattgtagcaacaacatggatcaagctttcattcttaacattaaattcagag-aaact 5706160  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatatta-ttttccaaaactattcaattaggtcaatttcagaaattataga 205  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  5706159 aacatcatctttactcattccatcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaatttcaggaattataga 5706060  T
Q  206 ttatgattattgagagatggtctcacccttaccttag 242  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  5706059 ttatgattaatgagagatagtctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 26583764 - 26583887
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagattatgattattgagagat 223  Q
    |||| |||||||||||||||| ||||||   |||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26583764 tcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaactatgcaattaggtcaatttcagaaattatagattatgattattgagagat 26583863  T
Q  224 ggtctcacccttaccttagttttg 247  Q
     |||||||||||||||||||||||    
T  26583864 agtctcacccttaccttagttttg 26583887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 6483654 - 6483772
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagaga 222  Q
    |||| ||| |||||||||||||||||||   |||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6483654 tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagaga 6483753  T
Q  223 tggtctcacccttacctta 241  Q
    | |||||||||||||||||    
T  6483754 tagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 6487121 - 6487239
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagaga 222  Q
    |||| ||| |||||||||||||||||||   |||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6487121 tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagaga 6487220  T
Q  223 tggtctcacccttacctta 241  Q
    | |||||||||||||||||    
T  6487221 tagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 19661630 - 19661454
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaattttcatattattt 165  Q
    ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||   |||  |||| |    
T  19661630 gattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttatct 19661531  T
Q  166 tccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  19661530 tccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 23265115 - 23265197
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  23265115 ttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 23280183 - 23280265
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  23280183 ttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 21908363 - 21908414
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  21908363 tttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 10580 - 10632
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  10580 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 25180981 - 25180929
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  25180981 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 17054412 - 17054651
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| | ||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||    
T  17054412 tcatcaattcatacaattcatccacaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaa-ct 17054510  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  17054511 aacatcatctttactcattccatcagaatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaatttcaggaattatagat 17054610  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  17054611 tatgattattgagagatagtctcacccttaccttggttttg 17054651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 23866561 - 23866675
Alignment:
Q  133 aatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagattatgattattgagagatggtctcacc 232  Q
    |||||||||||||||||||   |||  ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  23866561 aatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatttcaggaattataaattatgattattgagagatagtctcacc 23866660  T
Q  233 cttaccttagttttg 247  Q
    |||||||||||||||    
T  23866661 cttaccttagttttg 23866675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 44477559 - 44477678
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagaga 222  Q
    |||| ||| |||||||||||||||||||   |||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  44477559 tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagaga 44477658  T
Q  223 tggtctcacccttaccttag 242  Q
    | ||||||||||||||||||    
T  44477659 tagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 44492717 - 44492836
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagaga 222  Q
    |||| ||| |||||||||||||||||||   |||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  44492717 tcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagaga 44492816  T
Q  223 tggtctcacccttaccttag 242  Q
    | ||||||||||||||||||    
T  44492817 tagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 239
Target Start/End: Complemental strand, 8727920 - 8727735
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| ||||||||||| |||||||||||   |    
T  8727920 caacagtatagattaagttttcattctgaacattacattacaacagaattaacatgatcaatacccatacccctcagaatcatcgtcaaaccctaaccct 8727821  T
Q  156 catattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacct 239  Q
    ||  |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||    
T  8727820 caatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 23482135 - 23482053
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  23482135 ttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 18614217 - 18614327
Alignment:
Q  133 aatcatcatcaaaccctaattttca-tattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctca 230  Q
    ||||| ||| ||||||||||| ||| | |||| ||| | ||| |||||||| | ||||||| ||||||||||| || |||||||||||||||| ||||||    
T  18614217 aatcagcataaaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctca 18614316  T
Q  231 cccttacctta 241  Q
    |||||||||||    
T  18614317 cccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 25111980 - 25112045
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttgtaggaaga 255  Q
    |||||||| ||| | | ||| ||||||||||||| |||||||||||||||||| ||||||| ||||    
T  25111980 tttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaaaga 25112045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 29643437 - 29643386
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||| | |||||||||||||| ||||  ||||||||||||||||    
T  29643437 tttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 39364924 - 39364975
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    ||||||||||| || | ||| ||||||||||||| |||||||||||||||||    
T  39364924 tttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 14056615 - 14056558
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||| ||| | | ||| ||||||||||||| |||||||||||||||||| ||||    
T  14056615 tttcagaatttacatactattattattgagagatagtctcacccttaccttagatttg 14056558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 24320722 - 24320670
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  24320722 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 41111856 - 41112095
Alignment:
Q  7 tcatcaattcatacaattcatcaaaaattcaatcaatgagtggattgcagcaacagcatggattaagctttcattcttaacattaaattccgagaaaact 106  Q
    |||||||||||||||||||||| ||||||||||||||   |||||| |||||||| ||||||||||| |||| |||||||||||||||||| ||||| ||    
T  41111856 tcatcaattcatacaattcatccaaaattcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaa-ct 41111954  T
Q  107 aacatcatctttactcatcccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaaattatagat 206  Q
    |||| | ||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  41111955 aacaccgtctttactcattccatcagaatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaatttcagaaattatagat 41112054  T
Q  207 tatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  41112055 tatgattattgagagatagtctcacccttaccttagttttg 41112095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 20437211 - 20437024
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||   |    
T  20437211 caacagtatagattaagttttcattctgaacattacattacaacataattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccct 20437112  T
Q  156 catattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    ||  |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20437111 caatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 20045003 - 20044876
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttccc 289  Q
    |||||||| ||||| |||| ||| |||||  |||  || ||||||||||||||  ||||||||||||||||||||||||| ||||||||||| |||||||    
T  20045003 tttcagaatttatatattaagatcattgaaggataatcccacccttaccttagaattgtaggaagaattaacacagcaaatcagctcctaag-ttttccc 20044905  T
Q  290 ccttgttcttggtttctcttgctttctct 318  Q
    ||||||||||| |||||||||||||||||    
T  20044904 ccttgttcttgttttctcttgctttctct 20044876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 32651545 - 32651627
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| | |||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  32651545 ttattttcaagaacaactcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 18712787 - 18712854
Alignment:
Q  175 attcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||| ||||||| ||||||||||| | ||||||||||||||||| ||||||||| |||||||    
T  18712787 attcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 19663568 - 19663517
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| | ||||||||| ||||||| |||||||||||||||||    
T  19663568 tttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 11158097 - 11158148
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| |||| ||| |||||||| | |||||||||||||||||    
T  11158097 tttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 20805325 - 20805376
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| |||||||| |||||||| | | |||||||||||||||    
T  20805325 tttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 10811834 - 10811785
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacct 239  Q
    ||||||||||| || | ||| ||||||||||||| |||||||||||||||    
T  10811834 tttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 20851184 - 20851132
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  20851184 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 20857811 - 20857759
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  20857811 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 21706279 - 21706331
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  21706279 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 21710821 - 21710873
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||    
T  21710821 tttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 2087 - 1892
Alignment:
Q  54 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaatt 153  Q
    |||||||| || |||||||| ||||||| | ||||||||||| | ||| || |||||| ||| |||| ||| |||||| |||||||||||||||||||      
T  2087 cagcaacaacaaggattaagttttcattatgaacattaaattacaagagaattaacataatcattacccattccatcaaaatcatcatcaaaccctaacc 1988  T
Q  154 ttcatattattttccaaaactattcaattaggtcaa--tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
     ||| |||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  1987 ctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttg 1892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 8764 - 8569
Alignment:
Q  54 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcatcccatcagaatcatcatcaaaccctaatt 153  Q
    |||||||| || |||||||| ||||||| | ||||||||||| | ||| || |||||| ||| |||| ||| |||||| |||||||||||||||||||      
T  8764 cagcaacaacaaggattaagttttcattttgaacattaaattacaagagaattaacataatcattacccattccatcataatcatcatcaaaccctaacc 8665  T
Q  154 ttcatattattttccaaaactattcaattaggtcaa--tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
     ||| |||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  8664 ctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttg 8569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 12041 - 11845
Alignment:
Q  54 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaa 151  Q
    |||||||| ||  ||||||| ||||||||| || |||| ||| | ||| || |||||| ||| |||| |||  ||| |||||||||||||||||||||||    
T  12041 cagcaacaacaaagattaagttttcattctgaagattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaa 11942  T
Q  152 ttttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
     | |||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11941 ctctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 11845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 111554 - 111741
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||   |    
T  111554 caacagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccct 111653  T
Q  156 catattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  111654 caatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 99 - 247
Target Start/End: Original strand, 202 - 351
Alignment:
Q  99 agaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaatttcagaa 197  Q
    |||||| |||||| ||| |||| ||| ||| |||||||||||||||||||||||   |||  ||||||||||||||||| ||||||||||||||||||||    
T  202 agaaaattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatttcagaa 301  T
Q  198 attatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  302 attatagattatggttattgagagatagtctcacccttaccttagttttg 351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 1056 - 1238
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| ||| |||| ||||||||||||||   |||  |||||    
T  1056 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttatt 1155  T
Q  165 ttccaaaactattcaattaggtcaatttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1156 ttccaaaactatgcaattaggtcaatttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 50057 - 50239
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| ||| |||| ||||||||||||||   |||  |||||    
T  50057 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttatt 50156  T
Q  165 ttccaaaactattcaattaggtcaatttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50157 ttccaaaactatgcaattaggtcaatttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 50239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 111759 - 111943
Alignment:
Q  67 gattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat--cccatcagaatcatcatcaaaccctaattttcatattatt 164  Q
    ||||||| ||||||||| ||||||| ||| | ||| || |||||| ||| |||| |||  ||| |||||||||||||||||||||||   |||  ||||     
T  111759 gattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatc 111858  T
Q  165 ttccaaaactattcaattaggtcaattt--cagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  111859 ttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 111943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 91254 - 91202
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||| ||| ||||| |||||||| ||||| || ||||||||||||||    
T  91254 tttcagaaatcatatattatcattattgaaagatgatcccacccttaccttag 91202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 96980 - 96928
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||| ||| ||||| |||||||| ||||| || ||||||||||||||    
T  96980 tttcagaaatcatatattatcattattgaaagatgatcccacccttaccttag 96928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 11206 - 11402
Alignment:
Q  54 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcatcccatc-agaatcatcatcaaaccctaat 152  Q
    ||||||||| |||||||||| ||||||| | ||||| | ||| | | | || |||||| ||| |||||||| || || |||||||||||||||||||||     
T  11206 cagcaacagtatggattaagatttcattttgaacatcacattacaacagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaac 11305  T
Q  153 tttcatat-tattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
      |||  | |||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11306 cctcaattctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 11402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 318
Target Start/End: Complemental strand, 16116 - 15989
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttccc 289  Q
    |||||||||| ||| ||||| | |||||| ||||  || ||||||||||||||  ||||||||||||||||||||||||| ||||||||||| |||||||    
T  16116 tttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgtaggaagaattaacacagcaaatcagctcctaag-ttttccc 16018  T
Q  290 ccttgttcttggtttctcttgctttctct 318  Q
    |||||||||||||||||||||||||||||    
T  16017 ccttgttcttggtttctcttgctttctct 15989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 124 - 247
Target Start/End: Original strand, 30793 - 30918
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttca-tattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagag 221  Q
    |||| ||| ||||||||||||||||||||  ||| | |||  |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  30793 tcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagag 30892  T
Q  222 atggtctcacccttaccttagttttg 247  Q
    || |||||||||||||||||||||||    
T  30893 atagtctcacccttaccttagttttg 30918  T

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Target: scaffold0025 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 14587 - 14398
Alignment:
Q  54 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactca--tcccatcagaatcatcatcaaaccctaa 151  Q
    |||||||||||| ||||||| ||||||||  ||||| | ||| | | | || |||||| ||| |||| ||  |||| |||||||||||||||||||||||    
T  14587 cagcaacagcatagattaagttttcattcggaacatcacattacaacagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaa 14488  T
Q  152 ttttcatattattttcc-aaaactattcaattaggtcaa-tttcagaaattatagattatgattattgagagatggtctcacccttacct 239  Q
       |||  |||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14487 ccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

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Target: scaffold0924 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 870 - 745
Alignment:
Q  124 tcccatcagaatcatcatcaaaccctaattttcatattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagag 221  Q
    |||| ||| |||| ||||||||||||||   |||  ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  870 tcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagag 771  T
Q  222 atggtctcacccttaccttagttttg 247  Q
    || |||||||||||||||||||||||    
T  770 atagtctcacccttaccttagttttg 745  T

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Target: scaffold0553 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 242
Target Start/End: Complemental strand, 10383 - 10195
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||        
T  10383 caacagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccca 10284  T
Q  156 catattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||  |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  10283 caatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 229 - 318
Target Start/End: Complemental strand, 11096 - 11008
Alignment:
Q  229 cacccttaccttagttttgtaggaagaattaacacagcaaaccagctcctaagtttttcccccttgttcttggtttctcttgctttctct 318  Q
    ||||||||||||||  || |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  11096 cacccttaccttagaattttaggaagaattaacacagcaaatcagctcctaag-ttttcccccttgttcttgttttctcttgctttctct 11008  T

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Target: scaffold0544 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 242
Target Start/End: Complemental strand, 1713 - 1525
Alignment:
Q  57 caacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatctttactcat-cccatcagaatcatcatcaaaccctaatttt 155  Q
    |||||| || ||||||| ||||||||| ||||||| ||| | | | || |||||| |||  ||| ||| ||| |||||||||||||||||||||||        
T  1713 caacagtatagattaagttttcattctaaacattacattacaacagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccca 1614  T
Q  156 catattattttccaaaa-ctattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    ||  |||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  1613 caatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

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Target: scaffold0456 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 900 - 991
Alignment:
Q  156 catattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagtttt 246  Q
    |||||||| |||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  900 catattatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 8045 - 8136
Alignment:
Q  156 catattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagtttt 246  Q
    |||||||| |||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  8045 catattatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 18160 - 18230
Alignment:
Q  178 caattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    ||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18160 caattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttg 18230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 16793 - 16875
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  16793 ttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 116869 - 116951
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  116869 ttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 90 - 8
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||  |||| |||||||||||||| |||||||||||||||||    
T  90 ttattttcaagaacaattcaattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 13605 - 13687
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||||||||||  |||| |||||||||||||| |||||||||||||||||    
T  13605 ttattttcaagaacaattcaattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 102010 - 101928
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||| | ||| |||||||||| ||||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||||    
T  102010 ttattttcaagaacaattcaattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 40583 - 40526
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||    
T  40583 tttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttg 40526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 17647 - 17699
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||||    
T  17647 tttcagaaattatacattatggttattgagagatagtctcacccttaccttag 17699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 135477 - 135529
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  135477 tttcagaaattatatactatgattattgagagatagtctcacccttaccttag 135529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 22644 - 22594
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctt 240  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  22644 tttcagaaattatatactatgattattgagagatagtctcacccttacctt 22594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 1450 - 1519
Alignment:
Q  187 caatttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaa 256  Q
    ||||||||||||||||| |||| ||| |||||||| | ||||||||||||||||| ||||| || |||||    
T  1450 caatttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaaagaa 1519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 318
Target Start/End: Original strand, 9339 - 9467
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttagttttgtaggaagaatta-acacagcaaaccagct-cctaagtttttc 287  Q
    |||||||||||||| ||||||| |||||| ||||  || ||||||||||||||  ||||||  |||   | |||||||||  ||| | |||||||| | |    
T  9339 tttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgtag--agacagagacacagcaattcagtttcctaagttctcc 9436  T
Q  288 ccccttgttcttggtttctcttgctttctct 318  Q
    |||||||||||||||||||||||||| ||||    
T  9437 ccccttgttcttggtttctcttgcttcctct 9467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 34327 - 34276
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| | ||||||||| ||||||| |||||||||||||||||    
T  34327 tttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 15048 - 14997
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| |||| ||| |||||||| | |||||||||||||||||    
T  15048 tttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 12301 - 12352
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttacctta 241  Q
    |||||||||||||| |||||||| |||||||| | | |||||||||||||||    
T  12301 tttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 686 - 775
Alignment:
Q  160 ttattttccaaaactattcaattaggtcaattt--cagaaattatagattatgattattgagagatggtctcacccttaccttagttttg 247  Q
    |||||||| | ||||||||  |||||| |||||  ||||||||||| |||| ||| ||||| ||||  || |||||||||||||||||||    
T  686 ttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttg 775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 1331 - 1441
Alignment:
Q  133 aatcatcatcaaaccctaattttca-tattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctca 230  Q
    ||||| ||||||||||||||| ||| | ||||  || | ||| ||| |||||| ||||||| || |||||||| || ||||| ||||| |||| ||||||    
T  1331 aatcagcatcaaaccctaattctcagttttatcatcaagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctca 1430  T
Q  231 cccttacctta 241  Q
    |||||||||||    
T  1431 cccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 5929 - 5857
Alignment:
Q  171 aactattcaattaggtcaattt-cagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| | ||||| ||||||||||| ||||| || ||||| ||||  || ||||||||||||||    
T  5929 aactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 13969 - 13894
Alignment:
Q  169 aaaactattcaattaggtcaattt--cagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||||| | |||||  ||||||||||| ||||| || ||||| ||||  || ||||||||||||||    
T  13969 aaaactattcaattagattaatttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 13894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 1000 - 1052
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||| ||| ||||| | |||||||||||| || ||||||||||||||    
T  1000 tttcagaaatcatatattatcactattgagagatgatcccacccttaccttag 1052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 10242 - 10294
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||| | |||||||||||||  ||||  |||||||||||||||||    
T  10242 tttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 135441 - 135493
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| ||||||| |||||| ||||  |||||| ||||||||||    
T  135441 tttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 493079 - 493028
Alignment:
Q  190 tttcagaaattatagattatgattattgagagatggtctcacccttaccttag 242  Q
    |||||||||||||| |||| ||||||||| ||||  |||||||||||||||||    
T  493079 tttcagaaattatacatta-gattattgaaagataatctcacccttaccttag 493028  T

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