View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2708_high_1 (Length: 337)
Name: NF2708_high_1
Description: NF2708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2708_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 30770380 - 30770065
Alignment:
| Q |
3 |
gaattggtggcaaattctccattgaaggagtcaaagatgaagatgatagactattttctagcataggtgaattaggtgttgaattcacagcattaacatt |
102 |
Q |
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| T |
30770380 |
gaattggtggcaaattctccattgaaggagtcaaagatgatgatgataaactgttttctagcataggtgaattaggtgttgaattcacaacattaacatt |
30770281 |
T |
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| Q |
103 |
atcaaaaacattcttaaccttattgttgttgttttcaagcagagtcagtgattctacttgagattctaagttattgcttgaatcaccactagcaggaaca |
202 |
Q |
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| T |
30770280 |
atcaagaacattcttaaccttattgttgttgttttcaagcagagtcaatgattctacttgagattccaagttattgcttgaat---cactagcaggaaca |
30770184 |
T |
|
| Q |
203 |
ttatcaagattcacaaaagaatctcctgcagaatctgacacacctcttgagagaatccctgagttgttgagtgcatcaacaaaccatgtctcagattttg |
302 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30770183 |
ctatcaagattcacaaaagaatctcctgctgaatctgacacacctcttgagagaatccctgagttgttgagtgcatcaacaaaccatgtctcagattttg |
30770084 |
T |
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| Q |
303 |
catcatcaagaagtgatcc |
321 |
Q |
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||||||||||||||||||| |
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| T |
30770083 |
catcatcaagaagtgatcc |
30770065 |
T |
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