View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2708_high_3_N (Length: 315)
Name: NF2708_high_3_N
Description: NF2708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2708_high_3_N |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 18189255 - 18188951
Alignment:
| Q |
1 |
cacaacttgatctattcccctcaaccaagttaacattcccaccatcttgaacaacttgagtttcagcattttcttcctcgcgcattccagaaccttctcc |
100 |
Q |
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| T |
18189255 |
cacaacttgatctattcccctcaaccaatttaacattcccaccatcttgaacaacttgagtttcagcattttcttcctcgcgcattccagaaccttctcc |
18189156 |
T |
|
| Q |
101 |
gacctcacaaattgaattgttcccctcattcaagttaacatccccagcatttggagcaacttgagtttcaacattctcctcagggaccgagttttcgtcc |
200 |
Q |
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| T |
18189155 |
gacctcacaaattgaattgttcccctcattcaagttaacatccccagcatttggagcaacttgagtttcaacattctcctcagggaccgagttttcgtcc |
18189056 |
T |
|
| Q |
201 |
attggaatttctctgcaagaatcagcatccgcattcacttgctcaccacccacaacattttctcgaggcagagaatcttcttcaaaccctaatttcaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18189055 |
attggaatttctctgcaagaatcagcatccgcattcacttgctcaccacccacaacattttctcgaggcagagaatcttcttgaaaccctaatttcaatt |
18188956 |
T |
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| Q |
301 |
tcttt |
305 |
Q |
| |
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||||| |
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| T |
18188955 |
tcttt |
18188951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 18189279 - 18189186
Alignment:
| Q |
82 |
gcattccagaaccttctccgacctcacaaattgaattgttcccctcattcaagttaacatccccagcatttggagcaacttgagtttcaacatt |
175 |
Q |
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| T |
18189279 |
gcattccagaaccttctccgacctcacaacttgatctattcccctcaaccaatttaacattcccaccatcttgaacaacttgagtttcagcatt |
18189186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 52895044 - 52894989
Alignment:
| Q |
169 |
caacattctcctcagggaccgagttttcgtccattggaatttctctgcaagaatca |
224 |
Q |
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| T |
52895044 |
caacattttcctcttggacagggttttcgtccattggaatttctctgcaagaatca |
52894989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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