View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2708_low_1_N (Length: 760)

Name: NF2708_low_1_N
Description: NF2708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2708_low_1_N
NF2708_low_1_N
[»] chr6 (2 HSPs)
chr6 (54-530)||(30770250-30770726)
chr6 (601-747)||(30770796-30770942)
[»] chr2 (1 HSPs)
chr2 (7-64)||(35782553-35782610)


Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 54 - 530
Target Start/End: Original strand, 30770250 - 30770726
Alignment:
Q  54 caacaaaaataaggttaagaatgtttttgataatgttaatgctgtgaattcaacacctaattcacctatgctagaaaatagtctatcatcttcatctttg 153  Q
    |||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  30770250 caacaacaataaggttaagaatgttcttgataatgttaatgttgtgaattcaacacctaattcacctatgctagaaaacagtttatcatcatcatctttg 30770349  T
Q  154 actccttcaatggagaatttgccaccaattcgtgtccgtgtcgacgaaaatgctggtagcaggcttcaacaagagaacaaagttgtaatgaagcaagatg 253  Q
    ||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30770350 actccttcaatggagaatttgccaccaattcgtgttcgtgttgatgaaaatgccggtagcaggcttcaacaagagaacaaagttgtaatgaagcaagatg 30770449  T
Q  254 gtgggtttgttgtttcttctgctaatgtggctatggctgcaattcctgcaacatcaacaatggcttttggtggagttgttgctgctactagtggtgatgt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30770450 gtgggtttgttgtttcttctgctaatgtggctatggctgcaattcctgcaacatcaacaatggcttttggtggagttgttactgctactagtggtgatgt 30770549  T
Q  354 taatgtgaatagggttgtttctgatgatgagagatcagattatggaggattaatcggatctcgaaaaccgcctttgccattgcagcttggtcaaccaagg 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||    
T  30770550 taatgtgaatagggttgtttctgatgatgagagatcagattatggaggattaatcggatctcgaaaacctcctttaccgttgcagcttgttcaaccaagg 30770649  T
Q  454 actagtggtggtgtgagtcttccttcaccagattcagttacaaggtatggttggttatgctttgtgtaacattactc 530  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30770650 actagtggtggtgtgagtcttccatcaccagattcagttacaaggtatggttggttatgctttgtgtaacattactc 30770726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 601 - 747
Target Start/End: Original strand, 30770796 - 30770942
Alignment:
Q  601 tgttaatagtataatgctatcataagaaatcaaattatgttagtaggataaattttggttgttgtagttgttgatgtaaataaaaaataatttatgaatc 700  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30770796 tgttaatagtataatgttatcataagaaaacaaattatgttagtaggataaattttggttgttgtagttgttgatgtaaataaaaaataatctatgaatc 30770895  T
Q  701 gtgaaattttctagaattaggcgcgacttaatgtccgactcacgtct 747  Q
    |||||||||| |||||||||||| || ||||||||||||||||||||    
T  30770896 gtgaaattttttagaattaggcgtgatttaatgtccgactcacgtct 30770942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 35782610 - 35782553
Alignment:
Q  7 taaaaatgttttacattgtcaagtgtcaatgtataaaaattaaaacccaacaaaaata 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35782610 taaaaatgttttacattgtcaagtgtcaatgtataaaaattaaaacccaacaaaaata 35782553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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