View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2708_low_3 (Length: 208)
Name: NF2708_low_3
Description: NF2708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2708_low_3 |
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| [»] scaffold0007 (2 HSPs) |
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| [»] scaffold0573 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 30031 - 29848
Alignment:
| Q |
9 |
gagagagatgaacaatggccgcctttgatttttcaatagcttcaaaaagtgatttctcaatattttcccctttgtccatctccaagtcatccctgaaggt |
108 |
Q |
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| T |
30031 |
gagagagaacaacaatggccgcctttgatttttcaatagcttcaaaaagtgatttctcgatatttttccctttgtaaatctccaagtcatccctgaaggt |
29932 |
T |
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| Q |
109 |
gcggatccccgtgttatgtagagcattccaaagatttcctaaaaaatcactacgtgtatcagggcctctgaagttgaggaaaac |
192 |
Q |
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| T |
29931 |
gcggatccccctgttatgtagagcattccaaagatttcctgtaaaatcactacgtgtatcagggcctctgaagttgaggaaaac |
29848 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 65615 - 65432
Alignment:
| Q |
9 |
gagagagatgaacaatggccgcctttgatttttcaatagcttcaaaaagtgatttctcaatattttcccctttgtccatctccaagtcatccctgaaggt |
108 |
Q |
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| T |
65615 |
gagagagaacaacaatggccgcctttgatttttcaatagcttcaaaaagtgatttctcaatatttttccctttgtaaatctccaagtcatccctgaaggt |
65516 |
T |
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| Q |
109 |
gcggatccccgtgttatgtagagcattccaaagatttcctaaaaaatcactacgtgtatcagggcctctgaagttgaggaaaac |
192 |
Q |
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| T |
65515 |
gcggatccccctgttatgtagagcattccaaagatttcctgtaaaatcactacgtgtatcagggcctctgaagctgaggaaaac |
65432 |
T |
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Target: scaffold0573 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 10121 - 10290
Alignment:
| Q |
23 |
atggccgcctttgatttttcaatagcttcaaaaagtgatttctcaatattttcccctttgtccatctccaagtcatccctgaaggtgcggatccccgtgt |
122 |
Q |
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| T |
10121 |
atggccgcctttgatttttcaatagcttcgtaaagtgatttttcgatattgttccctttgtaaatctccaagtcgtccctgaaggtgcggatccccctat |
10220 |
T |
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| Q |
123 |
tatgtagagcattccaaagatttcctaaaaaatcactacgtgtatcagggcctctgaagttgaggaaaac |
192 |
Q |
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| T |
10221 |
tatgcaaagcattccaaatatttcctgtaaaatcacgacgtgtttcaaagcctctaaagctgaggaaaac |
10290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 28899673 - 28899504
Alignment:
| Q |
23 |
atggccgcctttgatttttcaatagcttcaaaaagtgatttctcaatattttcccctttgtccatctccaagtcatccctgaaggtgcggatccccgtgt |
122 |
Q |
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| T |
28899673 |
atggccgcctttgatttttcaatagcttcgtaaagtgatttttcgatattgttccctttgtaaatctccaagtcgtccctgaaggtgcggatccccctat |
28899574 |
T |
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| Q |
123 |
tatgtagagcattccaaagatttcctaaaaaatcactacgtgtatcagggcctctgaagttgaggaaaac |
192 |
Q |
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| T |
28899573 |
tatgcaaagcattccaaatatttcctgtaaaatcacgacgtgtttcaaagcctctaaagctgaggaaaac |
28899504 |
T |
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