View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2708_low_3_N (Length: 364)
Name: NF2708_low_3_N
Description: NF2708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2708_low_3_N |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 147 - 266
Target Start/End: Complemental strand, 44449128 - 44449007
Alignment:
| Q |
147 |
ttgagtatatggttagtttttatcatgttgagaattgaaaactttgattatatata--gttgaactagccagaattttgatcatgaattaaattaattat |
244 |
Q |
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| T |
44449128 |
ttgagtatatggttagtttttatcatgttgagaattgaaaattttgattatatatatagttgaactagctagaattttgatcatgaattaaattaattat |
44449029 |
T |
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| Q |
245 |
ctactgaattgaattaaccata |
266 |
Q |
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| T |
44449028 |
ctactgaactgaattaaccata |
44449007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 44449280 - 44449186
Alignment:
| Q |
29 |
attactcgcacttgaatttttacatctttgaccggtacttgtgagactctctcataagtctttatttataagaatcaaaagataaactcacccga |
123 |
Q |
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| T |
44449280 |
attactcgcatttgaatttttacatctttgaccggtacttgtgagactctctcataagtctttatttataagaatcaaaagatgaactcacccga |
44449186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 44448989 - 44448919
Alignment:
| Q |
284 |
aatgtgattgatcaaatgttgcatgtgtatg-tnnnnnnnntagatgtctaagtatctttaggctcaattg |
353 |
Q |
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| T |
44448989 |
aatgtgattgatcaaatgttgcatgtgtacgttaaaaaaaatagatgtctaaatatctttaggctcaattg |
44448919 |
T |
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