View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2708_low_4 (Length: 331)

Name: NF2708_low_4
Description: NF2708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2708_low_4
NF2708_low_4
[»] chr7 (2 HSPs)
chr7 (1-308)||(31260780-31261088)
chr7 (17-85)||(8745871-8745939)
[»] chr2 (2 HSPs)
chr2 (13-74)||(30841549-30841610)
chr2 (23-74)||(18203108-18203159)
[»] chr3 (9 HSPs)
chr3 (13-85)||(50196898-50196970)
chr3 (13-84)||(30130787-30130858)
chr3 (13-74)||(30135507-30135568)
chr3 (13-74)||(30141636-30141697)
chr3 (13-74)||(30145058-30145119)
chr3 (160-226)||(20995596-20995662)
chr3 (17-74)||(42643057-42643114)
chr3 (45-85)||(22312265-22312305)
chr3 (26-74)||(29495890-29495938)
[»] chr5 (2 HSPs)
chr5 (23-84)||(6423983-6424044)
chr5 (43-85)||(42042303-42042345)
[»] chr1 (2 HSPs)
chr1 (21-74)||(28843220-28843273)
chr1 (19-81)||(370787-370848)
[»] chr4 (2 HSPs)
chr4 (13-101)||(9928753-9928841)
chr4 (13-120)||(9928971-9929079)
[»] chr6 (1 HSPs)
chr6 (13-74)||(33104650-33104713)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 31260780 - 31261088
Alignment:
Q  1 tggaggagtgtt-ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagttcgaaaatctgagc 99  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||  |||||    
T  31260780 tggaggagtgttgataggcttgaatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacggtccgagaacttgagc 31260879  T
Q  100 aacatggaacaaataataaaccgcaaacaacttaccaacttcaacaccactcacgtttagcgtgagccggggtccaattcccaaattgcaatccttaacc 199  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31260880 aacatggaacaaataacaaaccgcaaacaacttaccaacttcaacaccactcacgtttagcgtgagccggggtccaattcccaaattgcaatccttaacc 31260979  T
Q  200 agctcacataccatgttaaataggcttcgataagtgcaacacaagacttctcaagagatcactcactattattctagttcaagcacgtttaactgcagag 299  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31260980 agctcacataccatgttaaataggcttagataagtgcaacacaagacttctcaagagatcactcactattactctagttcaagcacgtttaactgcagag 31261079  T
Q  300 ttctgatga 308  Q
    |||||||||    
T  31261080 ttctgatga 31261088  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 8745871 - 8745939
Alignment:
Q  17 gcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagt 85  Q
    ||||||||||||||| |||| |||| ||||| |||||||||| || |||||||||||| ||||||||||    
T  8745871 gcttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaacagt 8745939  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 30841549 - 30841610
Alignment:
Q  13 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 74  Q
    ||||| ||||||||||||| | || |||||||||| |||||||||| |||||||||||||||    
T  30841549 ataggtttggatctcatcccacaagttagtttaaaggatgaggatactcaaacatatttata 30841610  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 18203108 - 18203159
Alignment:
Q  23 atctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 74  Q
    ||||||||| |||| |||||| ||||||||||| |||| |||||||||||||    
T  18203108 atctcatcctaaaagttagttcaaatgatgagggtatttaaacatatttata 18203159  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 50196970 - 50196898
Alignment:
Q  13 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagt 85  Q
    ||||| ||||||||||||| |||| |||| | ||| ||||||| |||| ||||||||||||| ||||||||||    
T  50196970 ataggtttggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaacagt 50196898  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 30130787 - 30130858
Alignment:
Q  13 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacag 84  Q
    ||||| ||||||||||||| ||||| ||| | ||||||||| |||| |||| |||||||||| |||||||||    
T  30130787 ataggtttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacag 30130858  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 30135507 - 30135568
Alignment:
Q  13 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 74  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30135507 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30135568  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 30141636 - 30141697
Alignment:
Q  13 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 74  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30141636 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30141697  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 30145058 - 30145119
Alignment:
Q  13 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 74  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30145058 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30145119  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 20995662 - 20995596
Alignment:
Q  160 cgtgagccggggtccaattcccaaattgcaatccttaaccagctcacataccatgttaaataggctt 226  Q
    |||| ||| ||||| |||| ||| ||||||||| |||||| |||| |||| ||||||||||||||||    
T  20995662 cgtgggcccgggtctaatttccacattgcaatctttaaccggctctcatatcatgttaaataggctt 20995596  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 42643114 - 42643057
Alignment:
Q  17 gcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 74  Q
    ||||||||||||||  ||||||||  ||||||||||| | |||||||| |||||||||    
T  42643114 gcttggatctcatctcaaaaattaacttaaatgatgatggtattcaaatatatttata 42643057  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 22312305 - 22312265
Alignment:
Q  45 aaatgatgaggatattcaaacatatttataaactcaacagt 85  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  22312305 aaatgatgtggatactcaaacatatttatatactcaacagt 22312265  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 29495938 - 29495890
Alignment:
Q  26 tcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 74  Q
    ||||| ||||||||||||||||||||||  | ||| |||||||||||||    
T  29495938 tcatctaaaaaattagtttaaatgatgaaaaaatttaaacatatttata 29495890  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 6424044 - 6423983
Alignment:
Q  23 atctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacag 84  Q
    ||||||||| ||||| ||| ||||| ||||| |||| ||||||||||||||| |||||||||    
T  6424044 atctcatcctaaaaactagcttaaaagatgatgatactcaaacatatttatacactcaacag 6423983  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 42042345 - 42042303
Alignment:
Q  43 ttaaatgatgaggatattcaaacatatttataaactcaacagt 85  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||    
T  42042345 ttaaatgatgaagatactcaaacatatttatacactcaacagt 42042303  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 28843220 - 28843273
Alignment:
Q  21 ggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 74  Q
    ||||||||||  ||||| ||||||||| |||||||||||||||| |||||||||    
T  28843220 ggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttata 28843273  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 370848 - 370787
Alignment:
Q  19 ttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaa 81  Q
    |||||||||||| ||||  ||||||||||||| |||| || ||||||||||||||| ||||||    
T  370848 ttggatctcatctaaaag-ttagtttaaatgacgagggtactcaaacatatttatacactcaa 370787  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 9928753 - 9928841
Alignment:
Q  13 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagttcgaaaatctgagcaa 101  Q
    ||||||||| |||| |||| ||||||||| |||||  || ||| || ||||||||||||||| ||||||||   || ||||||||||||    
T  9928753 ataggcttgtatctaatcccaaaaattagcttaaaaaattagggtactcaaacatatttatacactcaacaacccggaaatctgagcaa 9928841  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 9928971 - 9929079
Alignment:
Q  13 ataggcttgga-tctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagttcgaaaatctgagcaacatggaacaa 111  Q
    ||||||||||| ||| || | |||| |||| | ||| |||||||||| ||||||||||||||| |||||||  | |||||| |||| ||| || ||| ||    
T  9928971 ataggcttggaatcttattccaaaagttagctcaaaagatgaggatactcaaacatatttatatactcaacgatccgaaaacctgaacaatatagaaaaa 9929070  T
Q  112 ataataaac 120  Q
    |||| ||||    
T  9929071 ataacaaac 9929079  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 33104713 - 33104650
Alignment:
Q  13 ataggcttggatctcatccaaaaaattagtttaaat--gatgaggatattcaaacatatttata 74  Q
    ||||| ||||||||||||| ||||||||| | ||||  ||||||| ||||||| ||||||||||    
T  33104713 ataggtttggatctcatcccaaaaattagatcaaattggatgagggtattcaagcatatttata 33104650  T

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