View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2709_high_2 (Length: 518)
Name: NF2709_high_2
Description: NF2709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2709_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 33948552 - 33948980
Alignment:
| Q |
18 |
ctatgcacgttccatgatatctatgatgtttcttggtaaacttggtgatgtggaacttgcatcaggttcattagccatagcttttgcaaacataaccggt |
117 |
Q |
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| T |
33948552 |
ctatgcacgttccatgatatctatgatgtttcttggtaaacttggtgatgtggaacttgcatcaggttcattagccatagcttttgcaaacataaccggt |
33948651 |
T |
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| Q |
118 |
tattcagttctttctggtttatctttaggtatggaacctctttgttctcaagcttttggtgctaaccgtccaaaacttctatcattaacacttcaacggt |
217 |
Q |
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| T |
33948652 |
tattcagttctttctggtttatctttaggtatggaacctctttgttctcaagcctttggtgctaaccgtccaaaacttctatcattaacacttcaacggt |
33948751 |
T |
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| Q |
218 |
gtataatcttcctcttatcatgttctttacccatttcttttctatggtttaatatgtctagaatctttcattttttacatcaagatgataaaatcaccca |
317 |
Q |
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| T |
33948752 |
gtataatcttcctcttatcatgttctttacccatttcttttctatggtttaatatgtctagaatctttcattttttacatcaagatgataaaatcaccca |
33948851 |
T |
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| Q |
318 |
aatgtcacaaacttatcttgtgtttttgttacctgatcttgttactaattcttttcttcaaccaattaggatttaccttcgtgctcaatctgtcacctac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948852 |
aatgtcacaaacttatcttgtgtttttgttacctgatcttgttactaattcttttcttcaaccaattaggatttaccttcgtgctcaatctgtcacctac |
33948951 |
T |
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| Q |
418 |
ccggtaactttagcatctttggttggaac |
446 |
Q |
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| T |
33948952 |
ccggtaactttagcatctttggttggaac |
33948980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 513
Target Start/End: Original strand, 33949009 - 33949047
Alignment:
| Q |
475 |
ctcttcaaaaagggtatttctggtattgcctttgcttct |
513 |
Q |
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| T |
33949009 |
ctcttcaaaaagggtatttctggtattgccattgcttct |
33949047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 43102903 - 43102758
Alignment:
| Q |
70 |
gaacttgcatcaggttcattagccatagcttttgcaaacataaccggttattcagttctttctggtttatctttaggtatggaacctctttgttctcaag |
169 |
Q |
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| T |
43102903 |
gaacttgcagccggttcactcgccatcgccttcgccaacatcaccggctactcagttctctccggtctctctctcggaatggaacctctctgttcacaag |
43102804 |
T |
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| Q |
170 |
cttttggtgctaaccgtccaaaacttctatcattaacacttcaacg |
215 |
Q |
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| T |
43102803 |
ccttcggagcaaaccgtcctaaactcctatccttaacacttcaacg |
43102758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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