View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2709_high_4 (Length: 304)
Name: NF2709_high_4
Description: NF2709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2709_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 288
Target Start/End: Original strand, 11883236 - 11883520
Alignment:
| Q |
4 |
ttctttggtggcaatcttgcacttcctggtcttagtctattcaagtgacagacaaatcaaaagggagaagcgagattaatttatttgtgatctctttgat |
103 |
Q |
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| T |
11883236 |
ttctttggtggcaatcttgcacttcctggtcttagtctattcaagtgacagacaaatcaaaagggagaagcgagattaatttatttgtgatctctttgat |
11883335 |
T |
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| Q |
104 |
ttatttgtgcatatatcaatatgaacgtgtatgatatttttctatttattgaagannnnnnnactgtaacctgttattgtgtttgtcaaaaggtgttaat |
203 |
Q |
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| T |
11883336 |
ttatttgtgcatatatcaatatgaacgtgtatgatatttttctatttattgaagatttttttactgtaacctgttattgtgtttgtcaaaaggtgttaat |
11883435 |
T |
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| Q |
204 |
aaagaatcacattcaatttctgttaaattatcagtatttgtttctttctaacaactaccattcatgcaaatgtggctattaaaaa |
288 |
Q |
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| T |
11883436 |
aaagaatcacattcaatttctgttaaattatcagtatttgtttctttctaacaactaccattcatgcaaatgtggctattaaaaa |
11883520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 11906088 - 11906161
Alignment:
| Q |
43 |
ttcaagtgacagacaaatcaaaagggagaagcgagattaatttatttgtgatctctttgatttatttgtgcata |
116 |
Q |
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| T |
11906088 |
ttcaagtgaaagacaaatcaagaagtggaagcgatattaatttatttgtgatctctttgatttatttgtgcata |
11906161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 11892369 - 11892478
Alignment:
| Q |
7 |
tttggtggcaatcttgcacttcctggtcttagtctattcaagtgacagacaaatcaaaagggagaagcgagattaatttatttgtgatctctttgattta |
106 |
Q |
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| T |
11892369 |
tttgatggccatcttgcacttcctaatcttattgtgttcaagtgactggctaatcaaaatgtggaagcgagattaatttatttattatctctttgattta |
11892468 |
T |
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| Q |
107 |
tttgtgcata |
116 |
Q |
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| T |
11892469 |
tatgtgcata |
11892478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 52818016 - 52817955
Alignment:
| Q |
4 |
ttctttggtggcaatcttgcacttcctggtcttagtctattcaagtgacagacaaatcaaaa |
65 |
Q |
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| T |
52818016 |
ttctttggtggccatcttgcacgtcctggtcttgttgtactcaagtgacatacaaatcaaaa |
52817955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 52817894 - 52817846
Alignment:
| Q |
90 |
gtgatctctttgatttatttgtgcatatatcaatatgaacgtgtatgat |
138 |
Q |
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| T |
52817894 |
gtgatctctttaatttatttgtgcatagatgaatatggtcgtgtatgat |
52817846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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