View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2709_high_6 (Length: 250)
Name: NF2709_high_6
Description: NF2709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2709_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 42676935 - 42677174
Alignment:
| Q |
13 |
aatattccctctaaaagttctat----ttcaatgaaataaatactaaccaaatctttttataaaagttata--tttgaatcaaataattagtaaatcttt |
106 |
Q |
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| T |
42676935 |
aatattccctctaaaagttatatatatttcaatgaaataa----taaccaaatctttttataaaagttatatatttgaatcaaataattagtaaatcttt |
42677030 |
T |
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| Q |
107 |
ttatgacaaacttggagaccactctaagcaatatatagcgtctttcctccactttccctgtcattagtcattactaatatcgatcacactttggtgatcg |
206 |
Q |
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| T |
42677031 |
ttatgacaaacttggagaccactctaagcaatatatagcgtctttcctccactttccctgtcattagtcattactaatatcgatcacactttggtgatcg |
42677130 |
T |
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| Q |
207 |
tgctccttctctctctcataaaacccttattctttgctgatcgt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42677131 |
tgctccttctctctctcataaaacccttattctttgctgatcgt |
42677174 |
T |
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