View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2709_low_1 (Length: 882)
Name: NF2709_low_1
Description: NF2709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2709_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 614; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 225 - 865
Target Start/End: Complemental strand, 48754098 - 48753457
Alignment:
| Q |
225 |
gttcatcctatgctaatacccttggcacattgacattgttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtctt-gt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
48754098 |
gttcatcctatgctaatacccttggcacattgccattgttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtctttgt |
48753999 |
T |
|
| Q |
324 |
gctgataggtaagtgtggattcaagcaggtcttcaagtgaagtctttggattccatccaagctgcttgttgatgattgtcatgtcaggaattctcttgtc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48753998 |
gctgataggtaagtgtggattcaagcaggtcttcaagtgaagtctttggattccatccaagctgcttgttgatgatggtcatgtcaggaattctcttgtc |
48753899 |
T |
|
| Q |
424 |
actatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatc |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48753898 |
actatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatc |
48753799 |
T |
|
| Q |
524 |
atcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagctctagcagggttttcaatcatcaacaaca |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753798 |
atcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagctctagcagggttttcaatcatcaacaaca |
48753699 |
T |
|
| Q |
624 |
ctgcttcaatagcatctttgatataaagaaaagtcctctgagactcaccaccatccacaagcttcaacggctctcctcgaagaagattgttgctgaagca |
723 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753698 |
ctgcttcaatagcatctttgatataaagataagtcctctgagactcaccaccatccacaagcttcaacggctctcctcgaagaagattgttgctgaagca |
48753599 |
T |
|
| Q |
724 |
agcaagaaccctaggaactccctcacttggaccatcaacaccatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaattgtaaattcc |
823 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48753598 |
agcaagaaccctaggaactccctcacttggaccatcaacactaggaatgaaatccattctcggtccaatccaattaaaaggtctcacaattgtaaattcc |
48753499 |
T |
|
| Q |
824 |
aacccattttcatcaccttctccataaatcaacctctcaatc |
865 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753498 |
aacccattttcatcaccttctccataaatcaacctctcaatc |
48753457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 263 - 865
Target Start/End: Complemental strand, 49052694 - 49052092
Alignment:
| Q |
263 |
ttgttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcttcaagtg |
362 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49052694 |
ttgttttaacttgcaatggtttgtgcaatgactttcttaatagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcctcaagtg |
49052595 |
T |
|
| Q |
363 |
aagtctttggattccatccaagctgcttgttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagct |
462 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49052594 |
aagtcttcggattccatccaagctgcttgttgatgatggtcatatcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagct |
49052495 |
T |
|
| Q |
463 |
cacatcaactgtaggtgtttcaagaggttgatcaccacttacctttgaataaaccttgatcatcatttcagccagctcccgaaccgtaacctcattgttc |
562 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
49052494 |
cacatcaattgtaggagtttcaagaggttgatcaccacttacctttgaataaaccttgatcatcatttcagctagctcccgaactgtaacctcgttgttc |
49052395 |
T |
|
| Q |
563 |
gggttacccacattaaatatcttcccattagctctagcagggttttcaatcatcaacaacactgcttcaatagcatctttgatataaagaaaagtcctct |
662 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49052394 |
gggttacccacattaaatatcttgccattagctctagcagggttttcaatcatcaacaacactgcctcaatagcatctttgatataaagaaaagtcctct |
49052295 |
T |
|
| Q |
663 |
gagactcaccaccatccacaagcttcaacggctctcctcgaagaagattgttgctgaagcaagcaagaaccctaggaactccctcacttggaccatcaac |
762 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49052294 |
gagactcaccaccatctacaagcttcaacggctctccacgaagaagattgttgctgaagcaagcaagaaccctaggaactccctcacttggaccatcaac |
49052195 |
T |
|
| Q |
763 |
accatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaattgtaaattccaacccattttcatcaccttctccataaatcaacctctca |
862 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||| |
|
|
| T |
49052194 |
accaggaatgaaatccattctcgggtcaatccaattaaaaggcctcacaattgtaaactccaaccccttttcatcaccttcaccataaatcaacctttca |
49052095 |
T |
|
| Q |
863 |
atc |
865 |
Q |
| |
|
||| |
|
|
| T |
49052094 |
atc |
49052092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 48754312 - 48754210
Alignment:
| Q |
11 |
atcatcatatgtagttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaaacctta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
48754312 |
atcatcatatgtagttaatacaaacaagagaatcataattcaaatttctgctagagcaacctaacaaagccttatcataaatatgaactgtcaaaactta |
48754213 |
T |
|
| Q |
111 |
acc |
113 |
Q |
| |
|
||| |
|
|
| T |
48754212 |
acc |
48754210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 686 - 865
Target Start/End: Original strand, 18136426 - 18136605
Alignment:
| Q |
686 |
ttcaacggctctcctcgaagaagattgttgctgaagcaagcaagaaccctaggaactccctcacttggaccatcaacaccatgaatgaaatccattctcg |
785 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| || ||||||||| | |
|
|
| T |
18136426 |
ttcaacggctctccacgaagaagattgttgctgaagcaagcaagaaccctaggaactctctcacttggaccatcaacactaggaacgagatccattcttg |
18136525 |
T |
|
| Q |
786 |
gtccaatccaattaaaaggtctcacaattgtaaattccaacccattttcatcaccttctccataaatcaacctctcaatc |
865 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18136526 |
gtccaatccaattaaaaggtctcacaattgtaaactccaacccattttcatcaccttcaccataaatcaacctctcaatc |
18136605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 8e-42; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 383 - 518
Target Start/End: Original strand, 20488359 - 20488494
Alignment:
| Q |
383 |
agctgcttgttgatgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgttt |
482 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20488359 |
agctgcttgttgattatggtcatgtcaggaattctcttgtcactatcatcatatccctcaccataaaattctttcgagctcacatcaatcgtaggtgttt |
20488458 |
T |
|
| Q |
483 |
caagaggttgatcaccacttacctttgaataaacct |
518 |
Q |
| |
|
|| | |||||| ||||| ||||||||||| |||| |
|
|
| T |
20488459 |
caggtggttgagttccactaacctttgaatagacct |
20488494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 20488155 - 20488268
Alignment:
| Q |
266 |
ttttaacttgcaatgggttgtgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtcttcaagtgaag |
365 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || | ||||| || |||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20488155 |
ttttaacttgcaattggttgagcaatgactttcttaatggcttcggcgtatgtcctgtgctgataggtaagtgtggattcaagcaggtcccaaagtgaag |
20488254 |
T |
|
| Q |
366 |
tctttggattccat |
379 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20488255 |
tctttggattccat |
20488268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 609 - 711
Target Start/End: Original strand, 20488756 - 20488858
Alignment:
| Q |
609 |
caatcatcaacaacactgcttcaatagcatctttgatataaagaaaagtcctctgagactcaccaccatccacaagcttcaacggctctcctcgaagaag |
708 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||| |||| ||| || ||||| || |||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
20488756 |
caatcatcaataagacagcttcaatagcatctttgatgtaaacaaatgttctctgggattcaccaccatccacaagcttgaggggctctcctctaagaag |
20488855 |
T |
|
| Q |
709 |
att |
711 |
Q |
| |
|
||| |
|
|
| T |
20488856 |
att |
20488858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 713 - 840
Target Start/End: Original strand, 20488960 - 20489087
Alignment:
| Q |
713 |
ttgctgaagcaagcaagaaccctaggaactccctcacttggaccatcaacaccatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaa |
812 |
Q |
| |
|
||||||||||| |||||||| | ||||| ||||||||||| || |||| ||| ||||||| |||||||| ||||| ||||||||||| || ||||||| |
|
|
| T |
20488960 |
ttgctgaagcatgcaagaacacggggaacaccctcacttggtccgtcaataccgggaatgaagtccattctaggtccgatccaattaaagggcctcacaa |
20489059 |
T |
|
| Q |
813 |
ttgtaaattccaacccattttcatcacc |
840 |
Q |
| |
|
|||| || ||||| || |||||| |||| |
|
|
| T |
20489060 |
ttgtgaactccaagccgttttcagcacc |
20489087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 609
Target Start/End: Original strand, 20488577 - 20488671
Alignment:
| Q |
515 |
accttgatcatcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagctctagcagggttttc |
609 |
Q |
| |
|
|||| ||||||||||||||| |||| || ||| |||||||||||||| ||||||||||||||||| || | ||||| ||||| ||||||||||| |
|
|
| T |
20488577 |
acctggatcatcatttcagcgagctgcctaactgtaacctcattgtttgggttacccacattaaaaatatggccattggctctggcagggttttc |
20488671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 35914421 - 35914347
Alignment:
| Q |
31 |
caaacaagagaat-cataattcaaatttctgctagagcaacctaacaaagctttatcataaatatgaactgtcaa |
104 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| | ||||||||| |
|
|
| T |
35914421 |
caaacgagagaattcataattcaaatatctgctagagcaacctaacaaagctttataagaaatgttaactgtcaa |
35914347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 716 - 813
Target Start/End: Complemental strand, 19389604 - 19389507
Alignment:
| Q |
716 |
ctgaagcaagcaagaaccctaggaactccctcacttggaccatcaacaccatgaatgaaatccattctcggtccaatccaattaaaaggtctcacaat |
813 |
Q |
| |
|
||||||||||| | ||| || || || || |||||||||||||| || ||| ||||||| |||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
19389604 |
ctgaagcaagctaaaactcttgggacaccatcacttggaccatccactccaggaatgaagtccattcttggtccaatccagttataaggtctcacaat |
19389507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 35914211 - 35914143
Alignment:
| Q |
286 |
tgcaatgacttttttgacagcttcagcatatgtcttgtgctgataggtaagtgtggattcaagcaggtc |
354 |
Q |
| |
|
||||||||||| ||| | ||||| |||||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
35914211 |
tgcaatgacttctttaatagcttaagcataagtctcgtgcttataggtaagtgtggattcaagcaggtc |
35914143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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