View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2709_low_3 (Length: 417)
Name: NF2709_low_3
Description: NF2709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2709_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 2275146 - 2275538
Alignment:
| Q |
20 |
cgtagacccatgtgaggaacatggaccaagctgtaaaaggccacatcaaccaaaggtaccacttagatgtgtatggcttagaagccaaggcagcaaatcc |
119 |
Q |
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| T |
2275146 |
cgtagacccatgtgaggaacatggaccaagctgtaaaaggccacatcaaccaaaggtaccacttagatgtgtatggcttagaagccaaggcagcaaatcc |
2275245 |
T |
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| Q |
120 |
aaatcttagatgataaatggattctggggttgttaaatgtgttaagtggacaacatttggtgtctcttcctttctttttaatgttgactcatgcaactca |
219 |
Q |
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| T |
2275246 |
aaatcttagatgataaatggattctggggttgttaaatgtgttaagtggacaacatttggtgtctcttcctttctttttaatgttgactcatgcaactca |
2275345 |
T |
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| Q |
220 |
tctgaagccttgtccattgttccataaatgtagtcataaagtggcatgaagagtgagtagtttgttctaaactgagtatggtgcaaagagtgaaacctgc |
319 |
Q |
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| T |
2275346 |
tctgaagccttgtccattgttccataaatgtagtcataaagtggcatgaagagtgagtagtttgttctaaactgagtatggtgcaatgagtgaaacctgc |
2275445 |
T |
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| Q |
320 |
agtaataacaagtgaatttatttattaccaactcaaaagggcccacaatctttgaatttgggtgcaagattgaaattcaactcctttgcttct |
412 |
Q |
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| T |
2275446 |
agtaataacaagtgaatttatttattaccaactcaaaagggtccacaatctttgaatttgggtgcaagattgaaattcaactcctttgcttct |
2275538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 2255276 - 2255374
Alignment:
| Q |
220 |
tctgaagccttgtccattgttccataaatgtagtcataaagtggcatgaagagtgagtagtttgttctaaactgagtatggtgcaaagagtgaaacctg |
318 |
Q |
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| T |
2255276 |
tctgaagccttgtcaacagttccatagatgtaatcataaattggcatgaatagtgaataattagtccgaaattgtgtatgatgcaatgagtggaacctg |
2255374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 35355221 - 35355181
Alignment:
| Q |
241 |
ccataaatgtagtcataaagtggcatgaagagtgagtagtt |
281 |
Q |
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| T |
35355221 |
ccataaatgtagtcatacattggcatgaaaagtgagtagtt |
35355181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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